UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
Q9A807 (ACPS_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Holo-[acyl-carrier-protein] synthase; 4'-phosphopantetheinyl transferase AcpS; | |
Q45978 (UUP_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | ATP-binding protein Uup; Holdfast attachment protein C; | |
Q9A734 (SYDND_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase; Non-discriminating aspartyl-tRNA synthetase; | |
Q9A8U8 (RL22_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Large ribosomal subunit protein uL22; 50S ribosomal protein L22; | |
Q9A7Q1 (RS6_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Small ribosomal subunit protein bS6; 30S ribosomal protein S6; | |
P58167 (RL19_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Large ribosomal subunit protein bL19; 50S ribosomal protein L19; | |
Q9AA58 (MNMC_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC; tRNA (mnm(5)s(2)U34)-methyltransferase; 2.1.1.61; FAD-dependent cmnm(5)s(2)U34 oxidoreductase; 1.5.-.-; | |
Q9ABV2 (GLMS_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; D-fructose-6-phosphate amidotransferase; GFAT; Glucosamine-6-phosphate synthase; Hexosephosphate aminotransferase; L-glutamine--D-fructose-6-phosphate amidotransferase; | |
Q9A9F4 (LEPA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Elongation factor 4; Ribosomal back-translocase LepA; | |
Q9A6V2 (FLUC_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Fluoride-specific ion channel FluC; | |
Q9AAU7 (RL7_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Large ribosomal subunit protein bL12; 50S ribosomal protein L7/L12; | |
Q9A4N4 (RUTC_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | 3-aminoacrylate deaminase RutC; | |
Q9A8T0 (RS11_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Small ribosomal subunit protein uS11; 30S ribosomal protein S11; | |
Q9A347 (SYR_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Arginine--tRNA ligase; Arginyl-tRNA synthetase; | |
Q9A8T9 (RS8_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Small ribosomal subunit protein uS8; 30S ribosomal protein S8; | |
P58184 (LPXK_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Tetraacyldisaccharide 4'-kinase; Lipid A 4'-kinase; | |
P58112 (Y481_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Pirin-like protein CC_0481; | |
Q9A7N4 (PDXA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | 4-hydroxythreonine-4-phosphate dehydrogenase; 4-(phosphohydroxy)-L-threonine dehydrogenase; | |
Q9ABE7 (DAPD_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; | |
Q9A8G9 (F16PA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Fructose-1,6-bisphosphatase class 1; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1; | |
P12291 (TRPA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Tryptophan synthase alpha chain; | |
Q9A3I3 (YX21_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Uncharacterized isomerase CC_3221; | |
Q9A2N5 (BIOB_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Biotin synthase; | |
Q9A728 (TRPD_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Anthranilate phosphoribosyltransferase; | |
Q9A5K4 (PYRB_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Aspartate carbamoyltransferase catalytic subunit; Aspartate transcarbamylase; | |
Q9A502 (METN_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Methionine import ATP-binding protein MetN; | |
Q9A7Z5 (BPT_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Aspartate/glutamate leucyltransferase; | |
Q9A8V0 (RL2_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Large ribosomal subunit protein uL2; 50S ribosomal protein L2; | |
Q9A6H0 (TYSY_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Thymidylate synthase; | |
Q9A873 (KDUI_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; 5-keto-4-deoxyuronate isomerase; DKI isomerase; | |
Q9A301 (COXX_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Protoheme IX farnesyltransferase; Heme B farnesyltransferase; Heme O synthase; | |
Q9A7X1 (CYSA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Sulfate/thiosulfate import ATP-binding protein CysA; Sulfate-transporting ATPase; | |
Q9A6H4 (ILVC_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Ketol-acid reductoisomerase (NADP(+)); Acetohydroxy-acid isomeroreductase; Alpha-keto-beta-hydroxylacyl reductoisomerase; Ketol-acid reductoisomerase type 1; Ketol-acid reductoisomerase type I; | |
Q9A713 (LPXD_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | UDP-3-O-acylglucosamine N-acyltransferase; | |
P18914 (FLJL_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Flagellin FljL; 27 kDa flagellin; | |
O52531 (FLJO_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Flagellin FljO; | |
O52530 (FLJN_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Flagellin FljN; | |
O52529 (FLJM_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Flagellin FljM; | |
P37895 (Y2483_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Putative GTPase CC_2483; | |
Q9A6C8 (PANC_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Pantothenate synthetase; Pantoate--beta-alanine ligase; Pantoate-activating enzyme; | |
Q9AC57 (AROE_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Shikimate dehydrogenase (NADP(+)); | |
Q04955 (FLIG_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Flagellar motor switch protein FliG; | |
Q9A3G2 (PUR72_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Putative phosphoribosylaminoimidazole-succinocarboxamide synthase 2; SAICAR synthetase 2; | |
Q9A448 (ACCA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; | |
Q9A2P5 (HIS1_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | ATP phosphoribosyltransferase; | |
Q9A2B1 (MDH_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Malate dehydrogenase; | |
Q9A2V8 (ATPG_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | ATP synthase gamma chain; ATP synthase F1 sector gamma subunit; F-ATPase gamma subunit; | |
P58114 (Y3178_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Pirin-like protein CC_3178; | |
Q9A280 (DAPF_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Diaminopimelate epimerase; PLP-independent amino acid racemase; | |
Q9A838 (PRMA_CAUVC) | Swiss-Prot | Caulobacter vibrioides (strain ATCC 19089 / CB15) | Ribosomal protein L11 methyltransferase; |
Caulobacter vibrioides is a Gram-negative, oligotrophic bacterium widely distributed in freshwater lakes and streams. Caulobacter daughter cells have two very different forms. One daughter is a mobile "swarmer" cell that has a single flagellum at one cell pole that provides swimming motility for chemotaxis. The other daughter, called the "stalked" cell has a tubular stalk structure protruding from one pole that has an adhesive holdfast material on its end, with which the stalked cell can adhere to surfaces. Swarmer cells differentiate into stalked cells after a short period of motility. Chromosome replication and cell division only occurs in the stalked cell stage. Its name derives from its crescent shape caused by the protein Crescentin.
C. vibrioides is an important model organism for studying the regulation of the cell cycle, asymmetric cell division, and cellular differentiation. Its use as a model originated with developmental biologist Lucy Shapiro.
From left to right: i) The number of proteins in the reference proteome of Caulobacter vibrioides, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Caulobacter vibrioides for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Caulobacter vibrioides, please visit UniProtKB.
You can easily download the latest protein sequences for Caulobacter vibrioides proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2024_02 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
3,720 | 2,949 | 4,973 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Caulobacter vibrioides reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Caulobacter vibrioides proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 15-mer | 16-mer | 20-mer | 24-mer | 25-mer | 26-mer | 34-mer | 40-mer | 42-mer | 55-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2,885 | 1,484 | 114 | 277 | 12 | 97 | 6 | 36 | 2 | 12 | 1 | 14 | 3 | 1 | 1 | 7 | 9 | 1 | 2 | 1 | 1 | 6 | 1 |