UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
F4J4Y5 (MD26A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable mediator of RNA polymerase II transcription subunit 26a; | |
Q0WL52 (NPY5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | BTB/POZ domain-containing protein NPY5; Protein NAKED PINS IN YUC MUTANTS 5; | |
Q9FK07 (CLPX1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | CLP protease regulatory subunit CLPX1, mitochondrial; | |
O23365 (C97B3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Cytochrome P450 97B3, chloroplastic; | |
Q9C757 (INT2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable inositol transporter 2; | |
Q9SIY8 (LAC5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Laccase-5; Benzenediol:oxygen oxidoreductase 5; Diphenol oxidase 5; Urishiol oxidase 5; | |
Q9SYK0 (HEXO2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Beta-hexosaminidase 2; Beta-GlcNAcase 2; Beta-N-acetylhexosaminidase 2; Beta-hexosaminidase 3; N-acetyl-beta-glucosaminidase 2; | |
Q9STS3 (CDC23_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Anaphase-promoting complex subunit 8; Cell division cycle protein 23 homolog; Cyclosome subunit 8; | |
Q93ZS9 (C3H47_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Zinc finger CCCH domain-containing protein 47; AtSZF1; | |
Q9ZQP6 (INT3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable inositol transporter 3; | |
F4JJJ3 (NDB3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial; External alternative NADH dehydrogenase NDB3; NADH:ubiquinone reductase (non-electrogenic) NDB3; | |
Q9SS01 (AAE20_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Benzoate--CoA ligase, peroxisomal; Acyl-activating enzyme 20; Protein BENZOYLOXYGLUCOSINOLATE 1; | |
F4JXF1 (GAF1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein GAMETOPHYTE DEFECTIVE 1; Probable ribonuclease P protein subunit p30; | |
Q52QU2 (AIL6_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | AP2-like ethylene-responsive transcription factor AIL6; Protein AINTEGUMENTA-LIKE 6; | |
Q9LXA7 (GTE2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Transcription factor GTE2; Bromodomain-containing protein GTE2; Protein GLOBAL TRANSCRIPTION FACTOR GROUP E2; | |
Q9FZ97 (MUC70_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable hexosyltransferase MUCI70; Protein MUCILAGE-RELATED 70; | |
Q949X9 (LPR2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Multicopper oxidase LPR2; Protein LOW PHOSPHATE ROOT 2; | |
Q8VYD6 (PP374_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pentatricopeptide repeat-containing protein At5g10690; CBS domain-containing protein CBSPPR1; | |
Q9LMS3 (LAC1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Laccase-1; Benzenediol:oxygen oxidoreductase 1; Diphenol oxidase 1; Urishiol oxidase 1; | |
F4I4K5 (LPR1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Multicopper oxidase LPR1; Protein LOW PHOSPHATE ROOT 1; | |
Q9LPQ8 (ALMT3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative aluminum-activated malate transporter 3; | |
Q8RX72 (AMPL3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Leucine aminopeptidase 3, chloroplastic; Leucyl aminopeptidase 3; Proline aminopeptidase 3; Prolyl aminopeptidase 3; | |
O82191 (MAOP1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | NADP-dependent malic enzyme 1; | |
Q94AC1 (STR6_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Rhodanese-like domain-containing protein 6; Sulfurtransferase 6; | |
Q39033 (PLCD2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phosphoinositide phospholipase C 2; Phosphoinositide phospholipase PLC2; | |
Q9LXY5 (PP284_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pentatricopeptide repeat-containing protein At3g56550; | |
Q9FX24 (PPR71_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pentatricopeptide repeat-containing protein At1g34160; | |
Q9C9Z0 (Y3866_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative BTB/POZ domain-containing protein At3g08660; | |
Q4V3B3 (BGL28_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Beta-glucosidase 28; | |
O23492 (INT4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Inositol transporter 4; Myo-inositol-proton symporter INT4; Protein INOSITOL TRANSPORTER 4; | |
Q9FNL7 (PTR3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein NRT1/ PTR FAMILY 5.2; Peptide transporter PTR3-A; | |
Q9LZT3 (ADF11_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative actin-depolymerizing factor 11; | |
Q9FF19 (SPH9_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | S-protein homolog 9; | |
Q9SKT7 (NDB4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial; External alternative NADH dehydrogenase NDB4; NADH:ubiquinone reductase (non-electrogenic) NDB4; | |
Q9LW22 (SPH21_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | S-protein homolog 21; | |
Q9M322 (TFB1C_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | General transcription and DNA repair factor IIH subunit TFB1-3; RNA polymerase II transcription factor B subunit 1-3; | |
P93822 (ERF97_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Ethylene-responsive transcription factor 14; Ethylene-responsive element-binding factor 14; | |
Q9LYG1 (TI173_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mitochondrial import inner membrane translocase subunit TIM17-3; | |
Q8LCE4 (AGP5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Classical arabinogalactan protein 5; | |
Q8LPJ7 (RS262_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Small ribosomal subunit protein eS26z; 40S ribosomal protein S26-2; | |
Q9LS43 (PCR7_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein PLANT CADMIUM RESISTANCE 7; | |
Q9SS17 (RS241_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Small ribosomal subunit protein eS24z; 40S ribosomal protein S24-1; | |
Q9FHG2 (RL322_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Large ribosomal subunit protein eL32y; 60S ribosomal protein L32-2; | |
Q38879 (TRXH2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Thioredoxin H2; Thioredoxin 2; | |
P49211 (RL321_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Large ribosomal subunit protein eL32z; 60S ribosomal protein L32-1; | |
Q8LC83 (RS242_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Small ribosomal subunit protein eS24y; 40S ribosomal protein S24-2; | |
Q94BV7 (NDB2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial; External alternative NADH dehydrogenase NDB2; NADH:ubiquinone reductase (non-electrogenic) NDB2; | |
Q944S1 (RH22_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | DEAD-box ATP-dependent RNA helicase 22; | |
Q9SIQ7 (CDPKO_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Calcium-dependent protein kinase 24; | |
F4I9E1 (NFD4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein NUCLEAR FUSION DEFECTIVE 4; |
Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.
A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.
The genome of A. thaliana was sequenced in 2000.
From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.
You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2024_02 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
27,448 | 20,240 | 37,334 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 16-mer | 18-mer | 24-mer | 32-mer | 35-mer | 36-mer | 40-mer | 48-mer | 55-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
30,410 | 5,314 | 346 | 697 | 28 | 271 | 58 | 33 | 8 | 20 | 4 | 68 | 19 | 4 | 1 | 26 | 2 | 1 | 1 | 12 | 1 | 1 | 6 | 3 |