UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
Q09420 (YRN6_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein R07B1.6; | |
Q17348 (SMD3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Small nuclear ribonucleoprotein Sm D3; snRNP core protein D3; | |
O62250 (TIM16_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Mitochondrial import inner membrane translocase subunit tim-16; | |
O01814 (FABP5_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Fatty acid-binding protein homolog 5; | |
P91914 (RL27_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Large ribosomal subunit protein eL27; 60S ribosomal protein L27; | |
Q27532 (H33L2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Histone H3.3-like type 2; | |
Q9U281 (H332_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Histone H3.3 type 2; | |
Q10453 (H331_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Histone H3.3 type 1; | |
Q9TY03 (FRDA_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Frataxin, mitochondrial; | |
O44578 (HIUH2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable 5-hydroxyisourate hydrolase ZK697.8; Transthyretin-like protein ZK697.8; | |
Q9GTD4 (NHR71_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Nuclear hormone receptor family member nhr-71; | |
Q09587 (NHR22_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Nuclear hormone receptor family member nhr-22; | |
Q17370 (NHR47_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Nuclear hormone receptor family member nhr-47; | |
Q9BL07 (PLBL3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative phospholipase B-like 3; LAMA-like protein 3; Lamina ancestor homolog 3; | |
Q21625 (DPOA2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | DNA polymerase alpha subunit B; Division delayed protein 1; | |
Q21065 (IFA3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Intermediate filament protein ifa-3; Cel IF A3; Intermediate filament protein A3; | |
O02365 (IFA2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Intermediate filament protein ifa-2; Cel IF A2; Intermediate filament protein A2; | |
O62146 (PLBL2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative phospholipase B-like 2; LAMA-like protein 2; Lamina ancestor homolog 2; | |
Q22002 (MAB10_CAEEL) | Swiss-Prot | Caenorhabditis elegans | NAB transcription cofactor mab-10; Protein male abnormal 10; | |
O44406 (ERI1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | 3'-5' exonuclease eri-1; Enhanced RNAi protein; | |
A0A486WWJ9 (SOMI1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Zinc finger protein somi-1; Suppressor of overexpressed micro-RNA protein 1; | |
Q11093 (YWZ3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein C02B8.3; | |
Q960A0 (YS9A_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative G-protein coupled receptor B0244.10; | |
P34748 (RT23_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Small ribosomal subunit protein mS23; 28S ribosomal protein S23, mitochondrial; | |
Q21735 (NTF2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable nuclear transport factor 2; | |
O01578 (MPC2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable mitochondrial pyruvate carrier 2; | |
Q93655 (NAD1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Sodium-dependent low-affinity dicarboxylate transporter 1; Na(+)/dicarboxylate cotransporter 1; | |
P34450 (ZTF1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Zinc finger transcription factor family protein 1; | |
Q9NAN1 (SAE2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | SUMO-activating enzyme subunit uba-2; | |
G5EGT9 (RYK_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Inactive tyrosine-protein kinase RYK; Abnormal cell lineage protein 18; | |
Q9NEZ7 (BBS1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Bardet-Biedl syndrome 1 protein homolog; | |
Q17426 (YQ4B_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative pseudouridine synthase B0024.11; | |
Q95XQ1 (SYDN_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Synaptic defective enhancer 1; | |
G5ECQ2 (FRIZ2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Frizzled-2; | |
Q7Z118 (YMPB_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative transporter B0361.11; | |
P34569 (KEL10_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Kelch repeat-containing protein kel-10; | |
Q09266 (YQD6_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein C32D5.6; | |
P34640 (DDX55_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable ATP-dependent RNA helicase DDX55 homolog; DEAD box protein 55; | |
Q09367 (NLP11_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Neuropeptide-like peptide 11; | |
P20269 (HM05_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Homeobox protein ceh-5; | |
O45406 (KBP3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Kinetochore-binding protein 3; | |
Q21432 (NAS11_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Zinc metalloproteinase nas-11; Nematode astacin 11; | |
Q27490 (H33L1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Histone H3.3-like type 1; | |
Q9U2C4 (GALT9_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable N-acetylgalactosaminyltransferase 9; Protein-UDP acetylgalactosaminyltransferase 9; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 9; | |
G5EBU3 (MMPC_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Matrix metalloproteinase-C; Zinc metalloprotease 3; | |
Q09563 (YR47_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Kelch repeat and BTB domain-containing protein F47D12.7; | |
Q17902 (EGAL1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Egalitarian protein homolog; | |
P46556 (YKG6_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized transporter B0285.6; | |
Q95QT8 (IFT56_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Intraflagellar transport protein 56 homolog; Abnormal dye filling protein 13; | |
P34664 (YOY6_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein ZK652.6; |
Caenorhabditis elegans is a free-living, transparent nematode, about 1 mm in length, that lives in temperate soil environments. The name means "elegant new rod".
C. elegans is a model organism for nervous system development as well as senescence. Of interest to researchers is the phenomenon of eutely: each adult hermaphrodite has exactly 959 and each adult male exactly 1031 somatic cell nuclei
C. elegans was the first multicellular organism to have its whole genome sequenced in 1998.
From left to right: i) The number of proteins in the reference proteome of Caenorhabditis elegans, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Caenorhabditis elegans for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Caenorhabditis elegans, please visit UniProtKB.
You can easily download the latest protein sequences for Caenorhabditis elegans proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2024_02 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
19,832 | 12,782 | 23,005 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Caenorhabditis elegans reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Caenorhabditis elegans proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 12-mer | 14-mer | 16-mer | 20-mer | 24-mer | 26-mer | 32-mer | 34-mer | 40-mer | 41-mer | 44-mer | 48-mer | 55-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20,250 | 1,849 | 161 | 377 | 106 | 101 | 8 | 37 | 8 | 13 | 38 | 6 | 8 | 4 | 10 | 1 | 6 | 1 | 10 | 3 | 2 | 1 | 2 | 2 | 1 |