Methods and Programs used by SWISS-MODEL
- Sequence Alignment:
- BLAST:
Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:403-410. (1990)
- SIM:
Huang, X., and Miller, M. A time-efficient, linear-space local similarity algorithm. Adv. Appl. Math. 12,337-367. (1991)
- ProModII:
Guex, N., and Peitsch, M.C. Structurally corrected multiple alignments.
- Comparative Protein Modelling:
- Energy Minimisation:
- Gromos96:
Information on this force field can be obtained from the ETH in Zürich.
- Model Evaluation:
- Swiss-PdbViewer:
Provides all necessary tools to evaluate the quality of a model.
This feature is thus no longer provided by the SWISS-MODEL server.
Torsten Schwede ,
Manuel C. Peitsch &
Nicolas Guex.