Structures & Models



Related Tools

  • Protein Model Portal
    The Protein Model Portal (PMP) provides a single portal to query millions of comparative protein models at various model databases simultaneously, as well as links to interactive services for comparative modelling, fold recognition, and quality assessment.

  • Worldwide Protein Data Bank [ RCSB-PDB ]   [ PDBe ]   [ PDBj ]  
    wwPDB is the single archive of experimental macromolecular structural data.

Structure Databases and Services
  • RCSB Protein Data Bank of experimental macromoelcular structures
  • PDBe EMBL-EBI's Protein Data Bank in Europe
  • PISA Protein Interfaces, Surfaces and Assemblies
  • EDS Electron Density Server at Uppsala University
  • SCOP Structural Classification of Proteins.
  • CATH Protein Structure Classification
Visualization
  • DeepView The Swiss-PdbViewer
  • DINO Protein Structure Visualization for Linux
  • Molscript a program for displaying molecular 3D structures such as proteins.
  • POV-RAY Open Source Raytracing software

Evaluation & Quality assessment

  • EVA continous and automatic evalutaion of protein structure prediction servers.
  • WhatCheck Protein structure verification tool
  • ProCheck Checks the stereochemical quality of a protein structure
  • CASP Critical Assessment of Techniques for Protein Structure Prediction
Fold recognition, Secondary Structure Prediction, Disordered regions, and PTMs
  • PredictProtein Service for sequence analysis, and structure prediction.
  • PHYRE Protein Homology/analogY Recognition Engine
  • SAM Sequence Alignment and Modeling System
  • DisoProd Disorder Prediction Server
  • PsiPred Protein Structure Prediction Server
  • PsiPred Protein Structure Prediction Server
  • TMHMM Prediction of transmembrane helices in proteins

Comparative modelling tools and servers

  • SWISS-MODEL Server Automated protein structure modelling by email.
  • SWISS-MODEL Repository A database of annotated automated three-dimensional protein models.
  • PIGS Automatic prediction of immunoglobulin structures.
  • WhatIf Protein structure analysis program for mutant prediction, structure verification, and molecular graphics.
  • Modeller Comparative protein modelling by satisfaction of spatial restraints.
  • 3DJigSaw Comparative protein modelling server.
  • CPHModels Homology modeling server.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.