ANOLEA (Atomic Non-Local Environment Assessment)

ANOLEA

( Atomic Non-Local Environment Assessment )

Francisco Melo and Ernest Feytmans.

Laboratory of Structural Molecular Biology, The University of Namur, Belgium.
This is an ANOLEA mirror site at the SWISS-MODEL server, provided by the Biozentrum , University of Basel, and the Swiss Institute of Bioinformatics. Please send any comments and enquiries to Torsten.Schwede@unibas.ch. The originial ANOLEA server by Francisco Melo can be found here.

What is ANOLEA ?

ANOLEA (Atomic Non-Local Environment Assessment) is a server that performs energy calculations on a protein chain, evaluating the "Non- Local Environment" (NLE) of each heavy atom in the molecule. The energy of each pairwise interaction in this non-local environment is taken from a distance-dependent knowledge-based mean force potential that has been derived from a database of 147 non-redundant protein chains with a sequence identity below 25% and solved by X-Ray crystallography with a resolution lower than 3 Å .

We strongly recommend to read the help provided for each mandatory parameter when using ANOLEA for the first time.

Job title (optional) :

Window Average: (Help)

Threshold to define a high energy amino acid : (Help)

Protein chain information (mandatory): (Help)

Please, in the box below, write the sequence of all the chain identifiers of your protein. In first place put the chain on which you want to perform the calculations. The non-local energy profile will be performed only on the chain indicated by the first chain identifier of the sequence supplied in the box below, but considering all the atoms of the other chain identifiers. If you are submiting a monomeric protein you must write the chain identifier if there is one. If there is not a chain identifier, please leave this box free. We strongly recommend to read the help provided for this issue when using ANOLEA for the first time.

Chain names:

Protein atomic coordinates (mandatory)

File Upload: Give the name of the PDB file in your system (it must be a text file not encoded !)

Warning: All heteroatoms supplied will be removed and will not be considered in the calculations.

Bibliography
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