SWISS-MODEL

• Visualisation The Swiss-PdbViewer and other viewers.
• Protein Structure Course Principles of Protein Structure, Comparative Protein Modelling and Visualisation

• Protein Model Portal
  The Protein Model Portal (PMP) provides a single portal to query millions of comparative protein models at various model databases simultaneously, as well as links to interactive services for comparative modelling, fold recognition, and quality assessment.

• Worldwide Protein Data Bank [ RCSB-PDB ]   [ PDBe ]   [ PDBj ]  
  wwPDB is the single archive of experimental macromolecular structural data.

• RCSB Protein Data Bank of experimental macromoelcular structures
• PDBe EMBL-EBI's Protein Data Bank in Europe
• PISA Protein Interfaces, Surfaces and Assemblies
• EDS Electron Density Server at Uppsala University
• SCOP Structural Classification of Proteins.
• CATH Protein Structure Classification

• DeepView The Swiss-PdbViewer
• DINO Protein Structure Visualization for Linux
• Molscript a program for displaying molecular 3D structures such as proteins.
• POV-RAY Open Source Raytracing software

Evaluation & Quality assessment

• EVA continous and automatic evalutaion of protein structure prediction servers.
• WhatCheck Protein structure verification tool
• ProCheck Checks the stereochemical quality of a protein structure
• CASP Critical Assessment of Techniques for Protein Structure Prediction

• PredictProtein Service for sequence analysis, and structure prediction.
• PHYRE Protein Homology/analogY Recognition Engine
• SAM Sequence Alignment and Modeling System
• DisoProd Disorder Prediction Server
• PsiPred Protein Structure Prediction Server
• PsiPred Protein Structure Prediction Server
• TMHMM Prediction of transmembrane helices in proteins

Comparative modelling tools and servers

• SWISS-MODEL Server Automated protein structure modelling by email.
• SWISS-MODEL Repository A database of annotated automated three-dimensional protein models.
• PIGS Automatic prediction of immunoglobulin structures.
• WhatIf Protein structure analysis program for mutant prediction, structure verification, and molecular graphics.
• Modeller Comparative protein modelling by satisfaction of spatial restraints.
• 3DJigSaw Comparative protein modelling server.
• CPHModels Homology modeling server.