Welcome to the SWISS-MODEL Repository

The SWISS-MODEL Repository is a database of annotated three-dimensional comparative protein structure models generated by the fully automated homology-modelling pipeline SWISS-MODEL.

Example Queries:
[P23298]  [GLDA_ECOLI]  [IPI00743503]  [NP_416402]  [GI:28872740]  [ENTREZ:54401]  [Sequence]

List of “model organisms” regularly updated in Repository

The proteomes of the following organisms are regularly updated in SWISS-MODEL Repository. A reference proteome is the complete proteome of a representative, well-studied model organism or an organism of interest for biomedical research. Reference proteomes are retrieved from the UniProt database.

Organism Taxonomy Number of models
Human Homo Sapiens 122489
Mouse Mus musculus 113156
Caenorhabditis elegans C. elegans 40516
Escherichia coli (strain K12) E.coli K12 4744
Mouse-ear cress A. thaliana 74646
Fruit Fly D. melanogaster 48409
Bakers Yeast S. cerevisiae 9383
Caulobacter crescentus C. crescentus 5346
Mycobacterium tuberculosis M. tuberculosis 6819
Pseudomonas aeruginosa P. aeruginosa 8197
Staphylococcus aureus S. aureus 3222
Plasmodium falciparum P. falciparum 6803

Statistics based on UniProt release 2014_03

The current release of the SWISS-MODEL Repository consists of 3197969 model entries for 2300309 unique sequences in the UniProt database (2014_03). In the last update cycle (2014-04-08) 109825 unique sequences were considered for revision. See the [release notes] of the last updates.

NOTE: The SWISS-MODEL repository contains theoretically calculated models, which may contain significant errors.

SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.