SWISS-MODEL Repository - Model Details

Model Overview
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1
196

Sequence
UniProt Q3BY45
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed
F0BNH2
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Nitroreductase

Model 3D Structure
Model information:
Modelled residue range: 9 to 195
Based on template: [ 3bem ]  
Sequence Identity [%]: 21%
Model date: 2008-09-03
Revision date: 2008-09-03

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-03. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment

TARGET    9          ALDQL FRTARTQNAF -ADTPVSHEV LRELYELVKW GPTAANSGPA
3bemA     0     hxa--efthl vnerrsasnf lsghpitked lnexfelval apsafnlqht
                                                                      
TARGET                hhhh hhh               hhh hhhhhhhhh          ss
3bemA            hh  hhhhh hhh               hhh hhhhhhhhh          ss


TARGET    53    RFVFVTSAEG KAKLKPALSE GNAAKTLAAP VTVIVAHDED FHEKLPYLFP
3bemA     48    kyvtvldqdv keklkqaa-- ngqykvvsss avllvlgdkq ayqqaadiye
                                                                      
TARGET          sssss  hhh hhhhhhsss      hhhh   sssssssss      hhhhhh
3bemA           sssss  hhh hhhhhhh        hhhh   sssssssss   h   hh   


TARGET    103   HADAKSWFDG ---------- -------PRE GRTESAFRNG SLQGAYLILA
3bemA     96    glkvlgilnk qeydhxvqdt vsfyenrgeq fkrdeairna slsaxxfxls
                                                                      
TARGET                                           hhhhhhhhhh hhhhhhhhhh
3bemA           hhhh     h hhhhhhhhhh hhhhhh   h hhhhhhhhhh hhhhhhhhhh


TARGET    136   ARALGLDAGP MSGFDNAKVD AAFFAGTPIK SNFLVNLGYG DPAGLFPRSP
3bemA     146   aaaagwdtcp xigfdaeavk rilniddqfe vvxxitigke ktesrrprgy
                                                                      
TARGET          hhhh  ssss s ssshhhhh hhh    sss ssssssss             
3bemA           hhhh  ssss s    hhhhh hhh    sss ssssssss             


TARGET    186   RLSFDEAARF                                            
3bemA     196   rkpvnefvey x                                          
                                                                      
TARGET                                                                
3bemA                                                                 



Quality


no data available!


no data available!


Template Selection
START PIPELINE ON ID: 5b73177f4a31d082fa2672abc92b9150 on BC2-cluster at Wed Sep  3 14:47:50 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>5b73177f4a31d082fa2672abc92b9150
**************************************************************************************************
>3bemA Evalue:2.3E-23 SeqID:21.463 Method:HHSEARCH Type:MODEL
----*******************************-**************************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
3bemA          9              195            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 5b73177f4a31d082fa2672abc92b9150 on gopt-66.cluster.bc2.ch BC2-Cluster at
Wed Sep  3 14:49:26 2008 


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




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