SWISS-MODEL Repository - Model Details

Model Overview
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1
237

Sequence
UniProt A9KGR9
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed
A9NB33
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed
Q83EL9
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed
A9ZJT6
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed
I7MNG3
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
A9KGR9: 360115.COXBURSA3

A9NB33: 360115.COXBURSA3

A9ZJT6: 360115.COXBURSA3

Domain
Link to: [ InterPro ]
RNase_PH
RNase_PH_C

Model 3D Structure
Model information:
Modelled residue range: 2 to 237
Based on template: [ 1r6l ]  
Sequence Identity [%]: 66%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment

TARGET    2         RPSKRA ANELRPLSFT TQFTRYAEGS VLVTLGNTKV ICNASIVEGV
1r6lA     2     xn--rpsgra adqlrpirit rhytkhaegs vlvefgdtkv ictvsaesgv
                                                                      
TARGET                          sssss ss      ss ssssss sss sssssssss 
1r6lA                           sssss ss      ss ssssss sss sssssssss 


TARGET    48    PRFLKNSEQG WLTAEYGMLP RSTHSRMDRE ASRGKQGGRT VEIQRLIGRS
1r6lA     49    prflk---qg wltaeygxlp rstgernqre asrgkqggrt leiqrligrs
                                                                      
TARGET                     sssssssss           h hhh    hhh hhhhhhhhhh
1r6lA                      sssssssss           h hhh    hhh hhhhhhhhhh


TARGET    98    LRAALDLKLL GPYTITIDCD VIQADGGTRT AAINGSCIAM IEALRHLQRK
1r6lA     99    lraaldlskl gentlyidcd viqadggtrt asitgatval idalavlkkr
                                                                      
TARGET          hhhsss hh   sssssssss ss     hhh hhhhhhhhhh hhhhhhhhhh
1r6lA           hhhsss hh   sssssssss ss     hhh hhhhhhhhhh hhhhhhhhhh


TARGET    148   GILQTDPLKH KVAAVSVGIY KGVPVLDLDY AEDSNAHTDM NVVMTDNDAF
1r6lA     149   galkgnplkq xvaavsvgiy qgvpvldldy ledsaaetdl nvvxtdaggf
                                                                      
TARGET                sss  ssssssssss   sssss  h hhhhh ssss ssssss  ss
1r6lA                 sss    ssssssss   sssss  h hhhhh ssss sssss   ss


TARGET    198   IEIQGTAEGD AFHAKELDAL INLARHGIKQ IIEKQQEALS           
1r6lA     199   ievqgtaega pfrpaelnax lelaqqgxqe lfelqraala e         
                                                                      
TARGET          ssssssss      hhhhhhh hhhhhhhhhh hhhhhhhhhh           
1r6lA           ssssssss      hhhhhhh hhhhhhhhhh hhhhhhhhhh           



Quality


no data available!


no data available!


Template Selection
START PIPELINE ON ID: d050eee9a30736459ce3cac9de71e2a2 on BC2-cluster at Sun Aug 31 17:56:46 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>d050eee9a30736459ce3cac9de71e2a2
*******************************************************************************
>1r6lA Evalue:3.74079e-82 SeqID:66.102 Method:BLAST Type:MODEL
*****************-*************************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1r6lA          2              237            BLAST          BUILT          

FINISHED PIPELINE ON ID: d050eee9a30736459ce3cac9de71e2a2 on gopt-16.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 17:59:16 2008 


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




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