SWISS-MODEL Repository - Model Details

Model Overview
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Sequence
UniProt Q8Z5T3
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed
H6P628
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
Q8Z5T3: 220341.STY2154

Domain
Link to: [ InterPro ]
HHH
GIY-YIG
UVR
UvrC_HhH_N

Model 3D Structure
Model information:
Modelled residue range: 555 to 610
Based on template: [ 1kft ]  
Sequence Identity [%]: 98%
Model date: 2008-09-03
Revision date: 2008-09-03

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-03. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    555     TSTLETIE GVGPKRRQML LKYMGGLQGL RNASVEEIAK VPGISQGLAE
1kftA     23      tssletie gvgpkrrqml lkymgglqgl rnasveeiak vpgisqglae
                                                                      
TARGET                sss  sss  hhhhh hhh   hhhh h   hhhh         hhhh
1kftA                 sss  sss  hhhhh hhh   hhhh h   hhhh         hhhh


TARGET    603   KIFWSLKH                                              
1kftA     71    kifwslkh-                                             
                                                                      
TARGET          hhhhh                                                 
1kftA           hhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: fa3fae0648aa9204c1b14de3f641af0f on BC2-cluster at Wed Sep  3 15:39:42 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>fa3fae0648aa9204c1b14de3f641af0f
*****************************************************************************
>1kftA Evalue:2.94898e-25 SeqID:98.214 Method:BLAST Type:MODEL
---------------------------------------------------------------------********
>3c65A Evalue:2.8E-45 SeqID:31.707 Method:HHSEARCH Type:MODEL
-----------------------------------------------***************-*****---------
>1yd6A Evalue:3E-22 SeqID:49.451 Method:HHSEARCH Type:MODEL
-***********-----------------------------------------------------------------
>1e52A Evalue:1.4E-06 SeqID:33.929 Method:HHSEARCH Type:MODEL
------------------------*******----------------------------------------------
>1ixrA Evalue:1E-07 SeqID:20.388 Method:HHSEARCH Type:MODEL
----------------------------------------------------------------*************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1kftA          555            610            BLAST          BUILT          
3c65A          380            542            HHSEARCH       BUILT          
1yd6A          8              98             HHSEARCH       BUILT          
1e52A          193            247            HHSEARCH       BUILT          
1ixrA          511            609            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: fa3fae0648aa9204c1b14de3f641af0f on gopt-43.cluster.bc2.ch BC2-Cluster at
Wed Sep  3 15:46:25 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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