SWISS-MODEL Repository - Model Details

Model Overview
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1
300

Sequence
UniProt A0AI80
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Phage_integrase
Phage_integr_N

Model 3D Structure
Model information:
Modelled residue range: 6 to 293
Based on template: [ 1a0p ]  
Sequence Identity [%]: 32%
Model date: 2008-09-03
Revision date: 2008-09-03

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-03. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    6          KLEQQ FLNYLHSERN YSVNTSTAYE NDILDFRRFL NEQAISEYQQ
1a0pA     3     qdl--arieq fldalwlekn laentlnayr rdlsmmvewl hhrglt-lat
                                                                      
TARGET                hhhh hhhhhh       hhhhhhhh hhhhhhhhhh hhh       
1a0pA            hh  hhhhh hhhhhh       hhhhhhhh hhhhhhhhhh hhh       


TARGET    51    VTFLDVRIYL TELKQKSFSR TTVARKISSL RSFYTFLLRE NVISENPFTY
1a0pA     50    aqsddlqall ae-------r lssarllsav rrlfqylyre kfreddpsah
                                                                      
TARGET            hhhhhhhh               hhhhhhh hhhhhhhhhh        hh 
1a0pA             hhhhhhhh h            hhhhhhhh hhhhhhhhhh        hh 


TARGET    101   VSHAKNQLRL PKFFYSEEME ALFQVVYEDN ETLTLRDRVL LEVLYGTGIR
1a0pA     100   l--------- -kdlseaqve rllqapli-d qplelrdkam levlyatglr
                                                                      
TARGET                          hhhhh hhhh        hhhhhhhhh hhhhhhh   
1a0pA                           hhhhh hhhh        hhhhhhhhh hhhhhhh   


TARGET    151   VSECAGILLS DLDTSYQAIL IRGKGNKERY VPFGAYAEDA ITDYLSSRTE
1a0pA     149   vselvgltms dislrqgvvr vigkgnkerl vplgeeavyw letylehgrp
                                                                      
TARGET          hhhhh sss  ssss  ssss sss   ssss sss hhhhhh hhhhh   hh
1a0pA           hhhh  sss  ssss  ssss sss   ssss sss hhhhhh hhhhh   hh


TARGET    201   LMIRFKKEHD SLLINHYGDP LTTRGIRYCL TKIISKASLT R-KIHPHMLR
1a0pA     199   wlln-gvsid vlfpsqraqq mtrqtfwhri khyavlagid seklsphvlr
                                                                      
TARGET          hhh      s ss           hhhhhhhh hhhhhhh         hhhhh
1a0pA           hhh      s ss           hhhhhhhh hhhhhhh         hhhhh


TARGET    250   HTFATDLLNN GADMRTVQEL LGHASLSSTQ IYTHVTKEHL KSTY      
1a0pA     248   hafathllnh gadlrvvqml lsd--lsttq iythvaterl rqlhq     
                                                                      
TARGET          hhhhhhhhh                    hhh hhhhhhhhhh hhh       
1a0pA           hhhhhhhhh                    hhh hhhhhhhhhh hhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 80284d4102f137acef6cd7deeb87bf99 on BC2-cluster at Wed Sep  3 19:20:58 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>80284d4102f137acef6cd7deeb87bf99
***************************************************************************
>1a0pA Evalue:0 SeqID:32.526 Method:HHSEARCH Type:MODEL
-***************-********---*********************************************--


TEMPLATE ID    START          STOP           METHOD         STATUS         
1a0pA          6              293            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 80284d4102f137acef6cd7deeb87bf99 on gopt-27.cluster.bc2.ch BC2-Cluster at
Wed Sep  3 19:24:39 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.