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SWISS-MODEL Repository - Model Details

Model Overview

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1927

Sequence

UniProt

A0FDS0

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain

Link to: [ InterPro ]

	TrbI
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M
	CagY_M

Model 3D Structure

	Model information:
	Modelled residue range:	1691 to 1895
	Based on template:	[ 2bhv ]
	Sequence Identity [%]:	23%
	Model date:	2008-07-31
	Revision date:	2008-07-31

Quaternary structure information:	[details]
NA

Ligand information:	[details]
NA

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-07-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]

Alignment


TARGET    1691         VLA QYTPIEITLT SKVDATLTGI VSGVVAKDVW NMNGTMILLD
2bhvA     166   nkllr--tit adkmipafli tpissqiagk viaqvesdif ahmgkavlip
                                                                      
TARGET                         ssssss   sss   ss ssssss  ss s    sss  
2bhvA               s  ss      ssssss   sss   ss ssssss  ss s    sss  


TARGET    1734  KGTKVYGNYQ SVKGGTPIMT RLMIVFTKAI TPDGVIIPLA NAQAAGMLGE
2bhvA     214   kgskvigyys nn--nkmgey rldivwsrii tphginimlt n-------ay
                                                                      
TARGET            ssssssss ss         ssssssssss s   sssss            
2bhvA             ssssssss ss  ss  ss ssssssssss s   sssss            


TARGET    1784  AGVDGYVNNH FMKRIGFAVI ASVVNSFLQT APIIALDKLI GLGKGRSERT
2bhvA     262   nglvgelier nfqrygvpll lstltnglli gitsa----- ----------
                                                                      
TARGET           hhhhhhhhh hhhh     s ssssss  ss sss                  
2bhvA           hhhhhhhhhh hhhh     s ssssss  ss s                    


TARGET    1834  PEFNYALGQA INGSMQSSAQ MSNQILGQLM NIPPSFYKNE GDSIKILTMD
2bhvA     310   -fgdyllmql mrqsgmginq vvnqilrdks kiapivvire gsrvfispnt
                                                                      
TARGET               hhhhh h      hhh hhhhhhhhhh     sssss   ssssssss 
2bhvA                 hhhh h      hhh hhhhhhhhhh      ssss   ssssssss 


TARGET    1884  DIDFSGVYDV KI -----                                   
2bhvA     359   diffpipren eviaeflk                                   
                                                                      
TARGET                   s ss                                         
2bhvA           ssss     s sssssss

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

no data available!

Oligomer Modelling Log

no data available!

Template Selection

START PIPELINE ON ID: 51cab0e5c3b65f7b8c421a8afead3f4a on BC2-cluster at Thu Jul 31 07:30:51 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>51cab0e5c3b65f7b8c421a8afead3f4a
*********************************************************************************
>2bhvA Evalue:2.6E-35 SeqID:23.902 Method:HHSEARCH Type:MODEL
----------------------------------------------------------------------*********--


TEMPLATE ID    START          STOP           METHOD         STATUS         
2bhvA          1691           1895           HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 51cab0e5c3b65f7b8c421a8afead3f4a on gopt-39.cluster.bc2.ch BC2-Cluster at
Thu Jul 31 07:50:49 2008

Template Search

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Template Description

Match

Chain

SeqId

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.