SWISS-MODEL Repository

[ Repository Query ] [ Full Text Query ]

SWISS-MODEL Repository - Model Details

Model Overview

Click on the bars to get more details about individual Models or experimental structures

1592

Sequence

UniProt

A0JP86

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain

Link to: [ InterPro ]

	Laminin_B
	Laminin_EGF
	Laminin_EGF
	Laminin_EGF
	Laminin_EGF
	Laminin_EGF
	Laminin_EGF
	Laminin_EGF
	Laminin_EGF
	Laminin_EGF
	Laminin_EGF
	Laminin_EGF
	Laminin_N

Model 3D Structure

	Model information:
	Modelled residue range:	754 to 917
	Based on template:	[ 1npe ]
	Sequence Identity [%]:	78%
	Model date:	2008-08-21
	Revision date:	2008-08-21

Quaternary structure information:	[details]
NA

Ligand information:	[details]
NA

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-21. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]

Alignment


TARGET    754     QPCPCPGG SSCAVVPRTK EVVCTNCPLG TTGKRCELCD DGYFGDPLGE
1npeB     736     qpcpcpgg sscaivpktk evvcthcptg tagkrcelcd dgyfgdplgs
                                                                      
TARGET                      sssss     sssss    s ss     sss  sss      
1npeB                       sssss     sssss    s ss     sss  sss      


TARGET    802   NGAPRPCRIC ECSNNIDPNA VGNCDRLTGE CLKCIYNTGG FYCDRCRDGF
1npeB     784   ngpvrlcrpc qcndnidpna vgncnrltge clkciyntag fycdrckegf
                                                                      
TARGET                 sss              sss    s ss    sss      sss ss
1npeB                  sss              sss    s ss    sss      sss ss


TARGET    852   YGNPLAQNPD LKCRACSCNP YGTVKGQSGC NQVTGQCECL PHVTERDCSA
1npeB     834   fgnplapnpa dkckacacnp ygtvqqqssc npvtgqcqcl phvsgrdcgt
                                                                      
TARGET          sss         sssss      sss              sss  sss     s
1npeB           s             sss      sss              sss  sss     s


TARGET    902   CEPGFYNLLS GRGCER                                     
1npeB     884   cdpgyynlqs gqgcer-                                    
                                                                      
TARGET          ss                                                    
1npeB           ss

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

no data available!

Oligomer Modelling Log

no data available!

Template Selection

START PIPELINE ON ID: 55152583e99a5e225d6cc3b39147b682 on BC2-cluster at Thu Aug 21 14:46:17 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>55152583e99a5e225d6cc3b39147b682
********************************************************************************
>1npeB Evalue:1.1295e-71 SeqID:78.049 Method:BLAST Type:MODEL
--------------------------------------********----------------------------------
>1kloA Evalue:1.3E-19 SeqID:29.193 Method:HHSEARCH Type:MODEL
-------------********-----------------------------------------------------------
>1jv2B Evalue:3E-06 SeqID:18.681 Method:HHSEARCH Type:MODEL
---------------------------------------------*****------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1npeB          754            917            BLAST          BUILT          
1kloA          269            421            HHSEARCH       BUILT          
1jv2B          902            991            HHSEARCH       NOT BUILT      

FINISHED PIPELINE ON ID: 55152583e99a5e225d6cc3b39147b682 on gopt-80.cluster.bc2.ch BC2-Cluster at
Thu Aug 21 14:57:15 2008

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.