SWISS-MODEL Repository - Model Details

Model Overview
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1
232

Sequence
UniProt A0K5L4
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Methyltransf_23

Model 3D Structure
Model information:
Modelled residue range: 32 to 207
Based on template: [ 3cc8 ]  
Sequence Identity [%]: 20%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    32       LNPVRLG WIDAHAHLAG KRALDIGCGG GILSESMAGL GAQVKGIDLS
3cc8A     19    a--vnpnllk hikk----ew kevldigcss galgaaiken gtrvsgieaf
                                                                      
TARGET                hhhh            sssssss     hhhhhhhh    ssssss  
3cc8A                 hhhh            sssssss     hhhhhhhh    ssssss  


TARGET    79    TEALGVADLH SLESGISVEY EAIAAEAIAA REPGTYDVVT CMEMLEHVPS
3cc8A     63    peaaeqakek ldhvvlgdie -----txdxp yeeeqfdcvi fgdvlehlfd
                                                                      
TARGET          hhhhhhhhhh   ssssssss s  ssss          ssss sss       
3cc8A           hhhhhhhhhh   sssss                     ssss sss       


TARGET    129   PGDIVAACAT LVKPGGWVFF STLNRNLKSY LFAVIGAEYI AQMLPKGTHD
3cc8A     108   pwaviekvkp yikqngvila sipnvshisv lapllagnwt yteyglldkt
                                                                      
TARGET          hhhhhhhhhh       ssss s      hhh hhhhhh               
3cc8A           hhhhhhhhhh      sssss ssss   hhh hhhhhh               


TARGET    179   YARFIRPSEL ASFVRATDLH IVEIKGITY  ---------- ----------
3cc8A     158   hirfftfnex lrxflkagys iskvdrvyvd hkxyepliee lygickkyrl
                                                                      
TARGET                hhhh hhhhhh                                     
3cc8A                 hhhh hhhhhh sss sssssss         hhhhh hhhhhhhh  


TARGET          ---------- ---------- --                              
3cc8A     208   gsgfxaetvv fqyiieaeks ql                              
                                                                      
TARGET                                                                
3cc8A              hhhhh   ssssssssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: d1a2f8e651fee593b7c90bd975c97484 on BC2-cluster at Sun Aug 31 23:49:50 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>d1a2f8e651fee593b7c90bd975c97484
******************************************************************************
>3cc8A Evalue:2.4E-19 SeqID:20.455 Method:HHSEARCH Type:MODEL
----------****-******************-***********************************---------
>1xtpA Evalue:6.6E-13 SeqID:16.981 Method:HHSEARCH Type:MODEL
-*************************************************----------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
3cc8A          32             207            HHSEARCH       BUILT          
1xtpA          5              150            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: d1a2f8e651fee593b7c90bd975c97484 on gopt-79.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 23:52:02 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.