SWISS-MODEL Repository - Model Details

Model Overview
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1
258

Sequence
UniProt A0K7U3
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
DNA_pol_B_exo2

Model 3D Structure
Model information:
Modelled residue range: 55 to 220
Based on template: [ 1d5a ]  
Sequence Identity [%]: 21%
Model date: 2008-07-31
Revision date: 2008-07-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-07-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

                                                       
1d5aA     1     mildadyite dgkpvirvfk kekgefkidy drdfepyiya llkddsaied
                                                                      
                                                       
1d5aA           ssssssssss   ssssssss ss  ssssss s    sssss sss     hh


                                                       
1d5aA     51    ikkitaerhg ttvrvtraer vkkkflgrpv evwklyfthp qdvpairdki
                                                                      
                                                       
1d5aA           h    sss   sss   ssss sssss  sss sssssss    hhhh   hhh


                                                       
1d5aA     101   rehpavvdiy eydipfakry lidrglipme gdeelrmlaf dietlahaga
                                                                      
                                                       
1d5aA               ssssss      hhhhh hhhh            sssss s         


TARGET    55          QRIA AISCVFRDNN GFRVRSLGT- ------PQDN EATLIQSFYR
1d5aA     151   aaga--gpil misyadeeg- -arvitwkni dlpyvesvst ekemikrflk
                                                                      
TARGET                      sss         sss                 hhhhhhhhhh
1d5aA                       sssss  s   sssss          sss   hhhhhhhhhh


TARGET    92    VIEKYTP-QL VSWNGGGFDL PVLHYRALVH GIPATRYWDL GEDDREFKWN
1d5aA     197   viqekdpdvl ityngdnfdf aylkkrseml gvkf----il grdgsepkiq
                                                                      
TARGET          hhhh     s ss      hh hhhhh                          s
1d5aA           hhhhh  sss ss      hh hhhhh                        sss


TARGET    141   NYISRYHSR- ----HTDLMD VLAMYQARAN APLDALAKLC GFPGKLGMDG
1d5aA     243   rmgdrfavev kgrihfdlyp virrtinlpt ytletvyepv fgqpaekvya
                                                                      
TARGET          ss  sss         ssshh hh               hhhh           
1d5aA           ss  sssss     ssssshh hh           h   hhhh           


TARGET    186   SQVWPAFRDG R-IEEIRNYC ETDVVNTYLL YCRFQL --- ----------
1d5aA     293   eeiaeawasg eglervarys medakatyel gkeffpmeaq lsrlvgqslw
                                                                      
TARGET             hhhhh       hhhhhh hhhhhhhhhh hhhhh                
1d5aA              hhhhh    hhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhh   hh


TARGET          ---------- ---------- ---------- ---------- ----------
1d5aA     343   dvsrsstgnl vewfllrkay erndvapnkp derelarrte syaggyvkep
                                                                      
TARGET                                                                
1d5aA           hh    hhhh hhhhhhhhhh hh          hhhhhhh             


TARGET          ---------- ---------- ---------- ---------- ----------
1d5aA     393   ekglwenivy ldykslypsi iithnvspdt lnregcreyd vapqvghrfc
                                                                      
TARGET                                                                
1d5aA               ssssss ssss hhhhh hhh               sss ss    ssss


TARGET          ---------- ---------- ---------- ---------- ----------
1d5aA     443   kdfpgfipsl lgdlleerqk vkkkmkatvd pierklldyr qraikilans
                                                                      
TARGET                                                                
1d5aA           s    hhhhh hhhhhhhhhh hhhhhhh    hhhhhhhhhh hhhhhhh   


TARGET          ---------- ---------- ---------- ---------- ----------
1d5aA     493   yygyyayana rwycrecaes vtawgrqyie ttmreieekf gfkvlyadtd
                                                                      
TARGET                                                                
1d5aA           hhhhhh         hhhhhh hhhhhhhhhh hhhhhhhh     ssssss s


TARGET          ---------- ---------- ---------- ---------- ----------
1d5aA     543   gffatipgad aetvknkake flnyinprlp glleleyegf yrrgffvtkk
                                                                      
TARGET                                                                
1d5aA           sssss      hhhhhhhhhh h   hhhh      sssssss sssssss   


TARGET          ---------- ---------- ---------- ---------- ----------
1d5aA     593   kyavideedk ittrgleivr rdwseiaket qarvleailk hgdveeavri
                                                                      
TARGET                                                                
1d5aA           ssssss   s ssss           hhhhhh hhhhhhhhhh h   hhhhhh


TARGET          ---------- ---------- ---------- ---------- ----------
1d5aA     643   vkevteklsr hevppeklvi yeagphvaaa atvisyivlk gpgrvgdrai
                                                                      
TARGET                                                                
1d5aA           hhhhhhhhhh          s ss            sss               


TARGET          ---------- ---------- ---------- ---------- -         
1d5aA     716   pfdefdpakh rydaeyyien qvlpaveril rafgyrkedl r         
                                                                      
TARGET                                                                
1d5aA                             hh    hh   hhh h

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: cad429c0b74b0ab053cf33867643acd5 on BC2-cluster at Thu Jul 31 20:49:46 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>cad429c0b74b0ab053cf33867643acd5
**************************************************************************************
>1d5aA Evalue:9.1E-15 SeqID:21.667 Method:HHSEARCH Type:MODEL
------------------****-******************--******************************-------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1d5aA          55             220            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: cad429c0b74b0ab053cf33867643acd5 on gopt-34.cluster.bc2.ch BC2-Cluster at
Thu Jul 31 20:52:51 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.