SWISS-MODEL Repository - Model Details

Model Overview
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1
495

Sequence
UniProt A0KEJ1
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Flavodoxin_1
Rubredoxin
Lactamase_B

Model 3D Structure
Model information:
Modelled residue range: 440 to 489
Based on template: [ 1b13 ]  
Sequence Identity [%]: 46%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    440       AMLCTV CQWVYDPAQG EPDQLVAPGT PWAQVPDSFL CPGCGIGKEV
1b13A     1     mk--kytctv cayiynpedg dpdngvnpgt dfkdipddwv cplcgvgkdq
                                                                      
TARGET              sssss    sss                                     s
1b13A               sssss    sss                                     s


TARGET    486   FEPC -                                                
1b13A     49    feevee                                                
                                                                      
TARGET          ssss                                                  
1b13A           ssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 17e0e387501b2f4e41300041e24e248b on BC2-cluster at Sun Aug 31 04:30:48 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>17e0e387501b2f4e41300041e24e248b
***********************************************************************************
>1ycfA Evalue:0 SeqID:41.058 Method:HHSEARCH Type:MODEL
******************************************************************-----------------
>1b13A Evalue:6.1E-14 SeqID:46.000 Method:HHSEARCH Type:MODEL
-------------------------------------------------------------------------*********-


TEMPLATE ID    START          STOP           METHOD         STATUS         
1ycfA          2              396            HHSEARCH       BUILT          
1b13A          440            489            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 17e0e387501b2f4e41300041e24e248b on gopt-58.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 04:35:17 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.