SWISS-MODEL Repository - Model Details

Model Overview
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1
142

Sequence
UniProt A0Q153
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
A0Q153: 386415.NT01CX_22

Domain
Link to: [ InterPro ]
NifU_N

Model 3D Structure
Model information:
Modelled residue range: 2 to 124
Based on template: [ 1q48 ]  
Sequence Identity [%]: 62%
Model date: 2008-07-31
Revision date: 2008-07-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-07-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    2         YSEKVM DHFRNPRNVG EIENPS---G VGEVGNPQCG DIMKIYLDVE
1q48A     1     ma--ysekvi dhyenprnvg sldkkdsnvg tgmvgapacg dvmqlqikvd
                                                                      
TARGET                                         s ssssss     ssssssss  
1q48A                                        sss ssssss     sssssssss 


TARGET    45    DN-IIKDVKF KTFGCGSAIA SSSMATELVK GKTLEEAWKL TNKAVAEALE
1q48A     49    dngiiedakf ktygcgsaia ssslitewvk gksleeagai knsqiaeele
                                                                      
TARGET                ssss s       hh hhhhhhhhh     hhhh      hhhhhhh 
1q48A                 ssss s       hh hhhhh   h     hhhh      hhhhhhh 


TARGET    94    GLPPVKMHCS VLAEEAIHTA INDYRVKQGL E -----              
1q48A     99    -lppvkvhcs ilaedaikaa iadykakqgl ehhhhhh              
                                                                      
TARGET                 hhh hhhhhhhhhh hhhhhh                          
1q48A                  hhh hhhhhhhhhh hhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: bf5d4fc70520b451a418f95ad5fc2f37 on BC2-cluster at Thu Jul 31 18:06:28 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>bf5d4fc70520b451a418f95ad5fc2f37
***********************************************************************
>1q48A Evalue:2.27152e-37 SeqID:62.205 Method:BLAST Type:MODEL
**************************************************************---------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1q48A          2              124            BLAST          BUILT          

FINISHED PIPELINE ON ID: bf5d4fc70520b451a418f95ad5fc2f37 on gopt-44.cluster.bc2.ch BC2-Cluster at
Thu Jul 31 18:06:38 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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