SWISS-MODEL Repository - Model Details

Model Overview
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1
211

Sequence
UniProt A0QR29
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
MspA

Model 3D Structure
Model information:
Modelled residue range: 28 to 211
Based on template: [ 1uun ]  
Sequence Identity [%]: 99%
Model date: 2008-07-31
Revision date: 2008-07-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-07-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    28      GLDNELSL VDGQDRTLTV QQWDTFLNGV FPLDRNRLTR EWFHSGRAKY
1uunA     1       gldnelsl vdgqdrtltv qqwdtflngv fpldrnrltr ewfhsgraky
                                                                      
TARGET            ssssssss ss   sssss ssss sssss        sss ssssssssss
1uunA             ssssssss ss   sssss ssss sssss        sss ssssssssss


TARGET    76    IVAGPGADEF EGTLELGYQI GFPWSLGVGI NFSYTTPNIL IDDGDITAPP
1uunA     49    ivagpgadef egtlelgyqi gfpwslgvgi nfsyttpnil iddgditrpp
                                                                      
TARGET          sss      s ssssssssss s ssssssss sss      s ss        
1uunA           sss      s ssssssssss s ssssssss sss      s ss        


TARGET    126   FGLNSVITPN LFPGVSISAD LGNGPGIQEV ATFSVDVSGA EGGVAVSNAH
1uunA     99    fglnsvitpn lfpgvsisad lgngpgiqev atfsvdvsga eggvavsnah
                                                                      
TARGET              sss       sssssss ssss   sss ssssssssss ssssss  ss
1uunA               sss       sssssss ssss   sss ssssssssss ssssssssss


TARGET    176   GTVTGAAGGV LLRPFARLIA STGDSVTTYG EPWNMN               
1uunA     149   gtvtgaaggv llrpfarlia stgdsvttyg epwnmn-              
                                                                      
TARGET          sssssss  s ssssssssss s  sssssss   sss                
1uunA           sssssss  s ssssssssss s  sssssss   sss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 5b45e75b52c3fe6ef0b45d32e142ca60 on BC2-cluster at Thu Jul 31 15:38:02 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>5b45e75b52c3fe6ef0b45d32e142ca60
***********************************************************************
>1uunA Evalue:7.8654e-97 SeqID:99.457 Method:BLAST Type:MODEL
---------**************************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
1uunA          28             211            BLAST          BUILT          

FINISHED PIPELINE ON ID: 5b45e75b52c3fe6ef0b45d32e142ca60 on gopt-56.cluster.bc2.ch BC2-Cluster at
Thu Jul 31 15:38:11 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.