SWISS-MODEL Repository - Model Details

Model Overview
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1
258

Sequence
UniProt A0R4C0
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
ABC_tran

Model 3D Structure
Model information:
Modelled residue range: 4 to 257
Based on template: [ 2olj ]  
Sequence Identity [%]: 31%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    4         RLDLKD VNIYYGAFHA VADVSLAVQP RSVTAFIGPS GCGKSTVLRT
2oljA     65535  lq--midvhq lkksfgslev lkginvhire gevvvvigps gsgkstflrc
                                                                      
TARGET              ssssss sssss  sss ssssssss    ssssss       hhhhhhh
2oljA               ssssss sssss  sss ssssssss    ssssss       hhhhhhh


TARGET    50    LNRMHEVIPG ARVEGSVLLD GEDIYGPGVD PVGVRKTIGM VFQRPNPFPT
2oljA     47    lnlledf--- --degeiiid ginlkakdtn lnkvreevgm vfqrfnlfph
                                                                      
TARGET          h            ssssssss  sss       hhhhhhh ss sss       
2oljA           h            ssssssss  sss        hhhhhh ss sss       


TARGET    100   MSIRDNVVAG -LKLQGVRNK KTLDEVAERS LRGANLWNEV KDRLDKPGGG
2oljA     92    mtvlnnitla pmkvrkw-pr ekaeakamel ldkvgl---- kdkahaypds
                                                                      
TARGET            hhhhhhhh  hhhh      hhhhhhhhhh hhh                  
2oljA             hhhhhhhh hhhh     h hhhhhhhhhh hhh                  


TARGET    149   LSGGQQQRLC IARAIAVQPD VLLMDEPCSA LDPISTLAIE DLIATLKL-D
2oljA     137   lsggqaqrva iaralamepk imlfdeptsa ldpemvgevl svmkqlaneg
                                                                      
TARGET            hhhhhhhh hhhhhh     ssssss       hhhhhhhh hhhh      
2oljA             hhhhhhhh hhhhhh     ssssss           hhhh hhhhhhhh  


TARGET    198   YTIVIVTHNM QQAARVSDQT AFFNLEATGK PGRLIEIDDT EKIFSNPRQK
2oljA     187   mtmvvvthem gfarevgdrv lfm------d ggyiieegkp edlfdrpqhe
                                                                      
TARGET            sssss  h hhhhh   ss sssssss  s ssssssss h hhhhh    h
2oljA            ssssss  h hhhhh   ss sss      s   ssssss h hhhhh    h


TARGET    248   ATEDYISGRF                                            
2oljA     231   rtkaflskvf -                                          
                                                                      
TARGET          hhhhhhh                                               
2oljA           hhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 58912a268ed5b60a35a6b1328ec1fb8b on BC2-cluster at Sun Aug 31 15:31:56 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>58912a268ed5b60a35a6b1328ec1fb8b
**************************************************************************************
>2oljA Evalue:0 SeqID:31.641 Method:HHSEARCH Type:MODEL
-******************-*************************-***************************--***********


TEMPLATE ID    START          STOP           METHOD         STATUS         
2oljA          4              257            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 58912a268ed5b60a35a6b1328ec1fb8b on gopt-48.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 15:38:56 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.