SWISS-MODEL Repository - Model Details

Model Overview
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1
185

Sequence
UniProt A0RUU1
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
CBS
HTH_3

Model 3D Structure
Model information:
Modelled residue range: 6 to 56
Based on template: [ 1y9q ]  
Sequence Identity [%]: 33%
Model date: 2008-07-07
Revision date: 2008-07-07

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-07-07. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    6                  DSIRQVRT KLGITQKRLA SLAGVSTSMI NQIESGRSQP
1y9qA     4     tdvxfksqia --nqlknlrk srglsldata qltgvskaxl gqiergessp
                                                                      
TARGET                        hhhhhhh hh   hhhhh hhh   hhhh hhhhh     
1y9qA            hhhhhhhhh   hhhhhhhh hh   hhhhh hhh   hhhh hhhhh     


TARGET    44    SYETAKRIFD NLA ------ ---------- ---------- ----------
1y9qA     52    tiatlwkias gleasfsaff andpqllsse rsfpddlnxk ihtlfpyaad
                                                                      
TARGET           hhhhhhhhh hh                                         
1y9qA            hhhhhhhhh hh    hh       hhhhh         sss ssss      


TARGET          ---------- ---------- ---------- ---------- ----------
1y9qA     102   tgleifeitl ldhhqqxssp halgvieyih vlegixkvff deqwhelqqg
                                                                      
TARGET                                                                
1y9qA            sssssssss ss sssss       ssssss ss sssssss   sssssss 


TARGET          ---------- ---------- ----------                      
1y9qA     152   ehirffsdqp hgyaavteka vfqnivaypr                      
                                                                      
TARGET                                                                
1y9qA           sssssss    ssssss sss ssssssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: d9ea2164571eeec1b91f05bff4f3a84b on BC2-cluster at Mon Jul  7 20:12:58 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>d9ea2164571eeec1b91f05bff4f3a84b
*********************************************************************************************
>2ef7A Evalue:4.2E-11 SeqID:18.548 Method:HHSEARCH Type:MODEL
-------------------------------*******************************-*****************************-
>1y9qA Evalue:2.2E-07 SeqID:33.333 Method:HHSEARCH Type:MODEL
--**************************-----------------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2ef7A          64             184            HHSEARCH       BUILT          
1y9qA          6              56             HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: d9ea2164571eeec1b91f05bff4f3a84b on gopt-64.cluster.bc2.ch BC2-Cluster at
Mon Jul  7 20:14:26 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.