SWISS-MODEL Repository - Model Details

Model Overview
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1
230

Sequence
UniProt A0S0B0
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
IL6

Model 3D Structure
Model information:
Modelled residue range: 94 to 205
Based on template: [ 1alu ]  
Sequence Identity [%]: 26%
Model date: 2008-08-21
Revision date: 2008-08-21

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-21. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    94                                                     ADCPS
1aluA     19    ltsseridkq iryildgisa lrketcnksn mcenlnlpkm aek--dgcfq
                                                                      
TARGET                                                                
1aluA             hhhhhhhh hhhhhhhhhh hhhhhhhhh                       


TARGET    99    ANFSKEACLQ RLAEGLHTYM VLFKHVEKEY PSSSILLHAR YHSG-ALIGL
1aluA     76    sgfneetclv kiitgllefe vyleylqnrf esseeqarav qmstkvliqf
                                                                      
TARGET              hhhhhh hhhhhhhhhh hhhhhhhhh     hhhhhhh hhh    hhh
1aluA               hhhhhh hhhhhhhhhh hhhhhhhhh     hhhhhhh hhhhhhhhhh


TARGET    148   IKEKMRNPGQ VTVPTSRQEQ QLLQDMDNPS TFHRKMTAHN ILRQLHNFLR
1aluA     126   lqkkaknlda ittpdpttna slltklqaqn qwlqdmtthl ilrsfkeflq
                                                                      
TARGET          hhhh            hhhhh hhhhhhh    hhhhhhhhhh hhhhhhhhhh
1aluA           hhhh            hhhhh hhhhhhh    hhhhhhhhhh hhhhhhhhhh


TARGET    198   NGKVAIRK                                              
1aluA     176   sslralrqm                                             
                                                                      
TARGET          hhhhhh                                                
1aluA           hhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: eb9635b3acb6ca10081eeced45332de5 on BC2-cluster at Thu Aug 21 13:50:06 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>eb9635b3acb6ca10081eeced45332de5
*****************************************************************************
>1aluA Evalue:7.1E-28 SeqID:26.549 Method:HHSEARCH Type:MODEL
-------------------------------*************************************---------
>1i1rB Evalue:1.8E-25 SeqID:17.333 Method:HHSEARCH Type:MODEL
-------------------************************************************----------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1aluA          94             205            HHSEARCH       BUILT          
1i1rB          59             202            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: eb9635b3acb6ca10081eeced45332de5 on gopt-27.cluster.bc2.ch BC2-Cluster at
Thu Aug 21 13:54:31 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.