SWISS-MODEL Repository - Model Details

Model Overview
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1
284

Sequence
UniProt A1ACW2
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
A1ACW2: 405955.APECO1_44

Domain
Link to: [ InterPro ]
F_bP_aldolase

Model 3D Structure
Model information:
Modelled residue range: 2 to 284
Based on template: [ 1gvf ]  
Sequence Identity [%]: 52%
Model date: 2009-12-08
Revision date: 2009-12-08

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2009-12-08. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    2       YVVSTKQM LNNARRGGYA VPAFNIHNLE TMQVVVETAA SMHAPVIIAG
1gvfA     2       siistkyl lqdaqangya vpafnihnae tiqailevcs emrspvilag
                                                                      
TARGET                 hhh hhhhhhh    ssssss  hh hhhhhhhhhh hh    ssss
1gvfA                  hhh hhhhhhh    ssssss  hh hhhhhhhhhh hh    ssss


TARGET    50    TPGTFTHAGT ENLMALVSAM AKQYHHPLAI HLDHHTKFDD IAQKVRSGVR
1gvfA     50    tpgtfkhial eeiyalcsay sttynmplal hldhhesldd irrkvhagvr
                                                                      
TARGET            hhhh   h hhhhhhhhhh hhhh    ss sss    hhh hhhhhhh  s
1gvfA             h      h hhhhhhhhhh hhhh    ss sss    hhh hhhhhhh  s


TARGET    100   SVMIDASHLP FAQNISRVKE VVDFCHRFDV SVEAELGQLG GQEDDVQVNE
1gvfA     100   samidgshfp faenvklvks vvdfchsqdc sveaelgrlg sa--------
                                                                      
TARGET          ssss       hhhhhhhhhh hhhhhh     ssssss             hh
1gvfA           ssss       hhhhhhhhhh hhhhhh     ssss                 


TARGET    150   ADAFYTNPVQ AREFAEATGI DSLAVAIGTA HGMYASAPAL DFSRLENIRQ
1gvfA     153   ---fltdpqe akrfveltgv dslavaigta hglysktpki dfqrlaeire
                                                                      
TARGET          h      hhh hhhhhhhh    sss                   hhhhhhhh 
1gvfA                  hhh hhhhhhhh    sss                   hhhhhhhh 


TARGET    200   WVNLPLVLHG ASGLSTKDIQ QTIKLGICKI NVATELKNAF SQALKNYLTE
1gvfA     200   vvdvplvlhg asdvpdefvr rtielgvtkv nvatelkiaf agavkawfae
                                                                      
TARGET                          hhhhh hhhhh  sss ss hhhhhhh hhhhhhhhhh
1gvfA                           hhhhh hhhhh  sss ss  hhhhhh hhhhhhhhhh


TARGET    250   YPEATDPRDY LQSAKSAMRD VVSKVIADCG CEGRA                
1gvfA     250   npqgndpryy mrvgmdamke vvrnkinvcg sanris               
                                                                      
TARGET                hhhh hhhhhhhhhh hh   hhhh                       
1gvfA                 hhhh hhhhhhhhhh hhhhhhhhh

Quality


no data available!

no data available!
Template Selection 
 - Start SMR-Pipeline for:0aa767f0431a3f85c8020382860b2215 on BC2-cluster at Mon Dec 21 18:02:31
2009 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Proof template(s) selection compared to previous Repository update
 - Selected template(s): no changes compared to previous version of the Repository:
 -  Template: 1gvfA (2-284) Sequence Identity: 52.650
 - Parameter file for Repository Pipeline
	
   BLAST
    Evalue :                              0.0001
    Minimum Template size for ranking :   25
    Minimum Sequence identity :           60
	
   HHSEARCH
    Evalue :                              0.0001
    Pvalue :                              50
    mact parameter:                       0.3
	
   RANKING
    Minimal number of uncovered target residues to go for HHSEARCH :           50
    Minimal number of uncovered target residues to accept additional model :   25
	
 - Finish SMR-Pipeline for:0aa767f0431a3f85c8020382860b2215 on BC2-cluster at Mon Dec 21 18:02:31
2009


Template Description
Match Chain SeqId

1gvf:
Not available
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-284 1gvfA 53%
[Model]

2fjk:
Not available
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-284 2fjkC 40%
[Model]

3gay:
Not available
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-284 3gayA 35%
[Model]

3c56:
Not available
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

3-283 3c56B 32%
[Model]

1dos:
Not available
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

5-283 1dosB 22%
[Model]

3elf:
Not available
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-284 3elfA 21%
[Model]

1xi3:
Not available
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

61-237 1xi3B 12%
[Model]

2fiq:
Not available
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-244 2fiqA 12%
[Model]

1qwg:
Not available
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

9-246 1qwgA 11%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.