SWISS-MODEL Repository 
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2009-12-11. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
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Alignment
TARGET 29 RK KLSEMVEEEL EQMIRRREFG EGEQLPSERE LMAFFNVGRP
1v4rA 1 mpykap--eg kgyadvathf rtliksgela pgdtlpsvad iraqfgvaak
TARGET hhhhhhh hhhh sss hh hhhh h
1v4rA hhhhhhh hhhh sss hh hhhh h
TARGET 71 SVREALAALK RKGLVQINNG ERARVSRPSA D -------- ----------
1v4rA 49 tvsralavlk seglvssrga lgtvveknpi vitgadrlkr mekngmryap
TARGET hhhhhhh hh sssss sssss
1v4rA hhhhhhh hh sssss sssss hhhh
TARGET --
1v4rA 99 ge
TARGET
1v4rA
no data available!
no data available!
Template Selection
- Start SMR-Pipeline for:98ef6d7f195026ab846b6fddb1407773 on BC2-cluster at Mon Dec 21 17:57:47
2009
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
- Run HHSearch to detect more templates...
- Proof template(s) selection compared to previous Repository update
- No need for modeling since selected templates are the same as in previous update
- Parameter file for Repository Pipeline
BLAST
Evalue : 0.0001
Minimum Template size for ranking : 25
Minimum Sequence identity : 60
HHSEARCH
Evalue : 0.0001
Pvalue : 50
mact parameter: 0.3
RANKING
Minimal number of uncovered target residues to go for HHSEARCH : 50
Minimal number of uncovered target residues to accept additional model : 25
- Finish SMR-Pipeline for:98ef6d7f195026ab846b6fddb1407773 on BC2-cluster at Mon Dec 21 17:57:47
2009
Template Search
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1v4r: Not available |
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3edp: Not available |
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3bwg: Not available |
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2ek5: Not available |
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3eet: Not available |
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2di3: Not available |
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3ihu: Not available |
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1hw1: Not available |
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3fms: Not available |
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3c7j: Not available |
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2hs5: Not available |
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3ic7: Not available |
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3by6: Not available |
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.