SWISS-MODEL Repository
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
| UniProt | A1AIE5 |
Database: TrEMBL (Unreviewed)  |
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Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2009-12-08. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
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Alignment
TARGET 8 KEKTRRSL VEAAFSQLSA ERSFASLSLR EVAREAGIAP TSFYRHFRDV
2hxiB 5 rrwsteqi ldaaaell-l a-gdatfsvr klaaslgtds sslyrhfrnk
TARGET hhhh hhhhhhh hh hhhhhh h hh h
2hxiB hhhh hhhhhhhh hh hhhhhh h hh h
TARGET 56 DELGLTMVDE SGLMLRQLMR QARQRIAKGG SVIRTSVSTF MEFIGNNPNA
2hxiB 52 tellravadr illsaxd--- -gyrpegdwk qrltavalrl resfgqqpql
TARGET hhhhhhhhhh hhhhhh hh hhhhhhhhhh hhhh hhh
2hxiB hhhhhhhhhh hhhhhh hh hhhhhhhhhh hhhh hhh
TARGET 106 FRLLLRERSG T -------- ---------- ---------- ----------
2hxiB 98 aavwgrhgsg gtgsrlxxee vlqalrasgl pddeiparyh rlvilissli
TARGET hhhhhh
2hxiB hhhhhhh hhhhhhhhh hhhhhhh hhhhhhhhh hhhhhhhhhh
TARGET ---------- ---------- ---------- ---------- ----------
2hxiB 148 taeggqfrva vlgadperfp alshfareir plgadrgaaf eeilaahlah
TARGET
2hxiB hhh h hhhhhhhh hhhhh hhhhhhhhhh
TARGET ------
2hxiB 212 leaaap
TARGET
2hxiB hhhh
no data available!
no data available!
Template Selection
- Start SMR-Pipeline for:7e80afa8569435e96b72e79efdcc11e0 on BC2-cluster at Mon Dec 21 17:46:31
2009
- Analyze BLAST summary ...
- No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH
- Run HHSearch to detect more templates...
- Proof template(s) selection compared to previous Repository update
- No need for modeling since selected templates are the same as in previous update
- Parameter file for Repository Pipeline
BLAST
Evalue : 0.0001
Minimum Template size for ranking : 25
Minimum Sequence identity : 60
HHSEARCH
Evalue : 0.0001
Pvalue : 50
mact parameter: 0.3
RANKING
Minimal number of uncovered target residues to go for HHSEARCH : 50
Minimal number of uncovered target residues to accept additional model : 25
- Finish SMR-Pipeline for:7e80afa8569435e96b72e79efdcc11e0 on BC2-cluster at Mon Dec 21 17:46:31
2009
Template Search
| Template Description |
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2hxi: Not available |
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2rek: Not available |
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2qib: Not available |
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3bru: Not available |
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3dew: Not available |
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2np3: Not available |
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3cwr: Not available |
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2oi8: Not available |
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3f1b: Not available |
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2np5: Not available |
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2yve: Not available |
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1z0x: Not available |
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3gzi: Not available |
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2hxo: Not available |
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3dpj: Not available |
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2g7l: Not available |
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3g1l: Not available |
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2nx4: Not available |
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2iai: Not available |
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3g7r: Not available |
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2g3b: Not available |
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2fx0: Not available |
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3bcg: Not available |
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2gfn: Not available |
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3b6c: Not available |
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2hyt: Not available |
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2pz9: Not available |
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3e7q: Not available |
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3cjd: Not available |
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2fd5: Not available |
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2eh3: Not available |
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2d6y: Not available |
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1ui6: Not available |
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2hyj: Not available |
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2guh: Not available |
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3ccy: Not available |
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2ibd: Not available |
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3he0: Not available |
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2id3: Not available |
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2zb9: Not available |
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2g7g: Not available |
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3iuv: Not available |
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3egq: Not available |
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3him: Not available |
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2g7s: Not available |
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2uxu: Not available |
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1zk8: Not available |
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2fbq: Not available |
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1sgm: Not available |
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3eup: Not available |
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3fiw: Not available |
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1bj0: Not available |
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2qko: Not available |
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3bqy: Not available |
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3c07: Not available |
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2of7: Not available |
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2q24: Not available |
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1t33: Not available |
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2hku: Not available |
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3f0c: Not available |
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3jsj: Not available |
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3bjb: Not available |
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2dg7: Not available |
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2ras: Not available |
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2w53: Not available |
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2rae: Not available |
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2qwt: Not available |
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2dg8: Not available |
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3geu: Not available |
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3cdl: Not available |
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2gen: Not available |
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2oer: Not available |
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2id6: Not available |
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3bni: Not available |
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1pb6: Not available |
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1rkt: Not available |
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3kkc: Not available |
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2v57: Not available |
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2zcx: Not available |
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3c2b: Not available |
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2o7t: Not available |
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3col: Not available |
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3g56: Not available |
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2i10: Not available |
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2vpr: Not available |
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3crj: Not available |
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2iu5: Not available |
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2f07: Not available |
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3dcf: Not available |
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2fq4: Not available |
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1vi0: Not available |
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2qco: Not available |
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2qtq: Not available |
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3bhq: Not available |
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3b81: Not available |
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2zcn: Not available |
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2pbx: Not available |
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1jt6: Not available |
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.