SWISS-MODEL Repository - Model Details

Model Overview
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1
220

Sequence
UniProt A1AJC0
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
A1AJC0: 405955.APECO1_21

Domain
Link to: [ InterPro ]
Hemerythrin
ScdA_N

Model 3D Structure
Model information:
Modelled residue range: 2 to 61
Based on template: [ 2k5e ]  
Sequence Identity [%]: 21%
Model date: 2009-12-08
Revision date: 2009-12-08

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2009-12-08. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    2           AYRD QPLGELALSI PRASALFRKY DMDY---CCG GKQTLARAAA
2k5eA     1     mtqk--ftkd mtfaqalqth pgvagvlrsy nlgcigcmga qnesleqgan
                                                                      
TARGET                       hhhhhh    hhhhhhhh                 hhhhhh
2k5eA                        hhhh   h hhhhhhhhh       hhh       hhhhhh


TARGET    43    RKELDVDVIE AELAKLAEQ  -----                           
2k5eA     49    ahglnvedil rdlnalaleh hhhhh                           
                                                                      
TARGET          h     hhhh hhhhhhhh                                   
2k5eA           hh    hhhh hhhhhhhh

Quality


no data available!

no data available!
Template Selection 
 - Start SMR-Pipeline for:a99b210754d8a9d5e0800794c1d6e49c on BC2-cluster at Mon Dec 21 17:38:05
2009 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Proof template(s) selection compared to previous Repository update
 - No need for modeling since selected templates are the same as in previous update

 - Parameter file for Repository Pipeline
	
   BLAST
    Evalue :                              0.0001
    Minimum Template size for ranking :   25
    Minimum Sequence identity :           60
	
   HHSEARCH
    Evalue :                              0.0001
    Pvalue :                              50
    mact parameter:                       0.3
	
   RANKING
    Minimal number of uncovered target residues to go for HHSEARCH :           50
    Minimal number of uncovered target residues to accept additional model :   25
	
 - Finish SMR-Pipeline for:a99b210754d8a9d5e0800794c1d6e49c on BC2-cluster at Mon Dec 21 17:38:05
2009


Template Description
Match Chain SeqId

2k5e:
Not available
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-62 2k5eA 22%
[Model]

2k53:
Not available
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

2-61 2k53A 19%
[Model]

3cax:
Not available
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

78-219 3caxA 16%
[Model]

2p0n:
Not available
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

76-218 2p0nA 12%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.