SWISS-MODEL Repository - Model Details

Model Overview
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1
347

Sequence
UniProt A1RT82
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Peptidase_M48

Model 3D Structure
Model information:
Modelled residue range: 108 to 261
Based on template: [ 3c37 ]  
Sequence Identity [%]: 22%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    108                                    RPDPRLQEIV DAVASRLG--
3c37A     9     kgfnxisieq ekelgnkfav eiekqqqp-- vndpevqryv dkvgkrllsg
                                                                      
TARGET                                              hhhhhhh hhhhhhh   
3c37A                  hhh hhhhhhhhhh hhhh  ss   s  hhhhhhh hhhhhhhhh 


TARGET    126   -----APFRI KAVVVDGPPN AFAYGNFLTG RYVAVTSSML ALT-DKRELE
3c37A     57    aravefdyvf k-vvkddsvn afaip----g grvyvhtgll kaadnetela
                                                                      
TARGET                  ss s        s ssss       ssssss hhh      hhhhh
3c37A                   ss s sss    s ssss       ssssssshhh hh   hhhhh


TARGET    170   AVIGHEIGHH LHRDNALMLL FGVLPSILYY LGVSSVRIAL SSSNNRNNNT
3c37A     102   gvlaheinha varhgtrqxt qeygyslvls ---------- ----------
                                                                      
TARGET          hhhhhhhhhh    hhhhhhh hh   hhhss ss                  s
3c37A           hhhhhhhhhh    hhhhhhh hh   hhhhh                      


TARGET    220   MLLAAVGILA VVVSFLVQLL VLAFSRLREY YADTAGAKAA GK -------
3c37A     132   lvlgdnxlaq lagqlfgkag xxsysreyen qadflgvetx ykagynpngl
                                                                      
TARGET          sss    hhh hh  sss  s ss   hhhhh hhhhhhhhhh hh        
3c37A           hhh   hhhh hhhhh           hhhhh hhhhhhhhhh hhh    hhh


TARGET          ---------- ---------- ---------- ---------- ----------
3c37A     184   tsffqklnat hpltseriqr vqaeiaklpp qryltdetef kkikgrlkle
                                                                      
TARGET                                                                
3c37A           hhhhhhhh       hhhhhh hhhhhh            hhh hhhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 5bb0823343df87fa9da7cff0f3d68dcd on BC2-cluster at Sat Aug 30 15:31:37 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>5bb0823343df87fa9da7cff0f3d68dcd
***************************************************************************************
>3c37A Evalue:4.3E-20 SeqID:22.840 Method:HHSEARCH Type:MODEL
---------------------------*********-*************-----**********----------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
3c37A          108            261            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 5bb0823343df87fa9da7cff0f3d68dcd on gopt-63.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 15:34:12 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.