SWISS-MODEL Repository - Model Details

Model Overview
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1
2073

Sequence
UniProt A2AF47
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
A2AF47: 10090.ENSMUSP000

Domain
Link to: [ InterPro ]
PH
Ded_cyto
DUF3398
DOCK_C2

Model 3D Structure
Model information:
Modelled residue range: 1613 to 2035
Based on template: [ 2wm9 ]  
Sequence Identity [%]: 68%
Model date: 2013-05-07
Revision date: 2013-04-01

Quaternary structure information: [details]
Template (2wm9): HETERO TETRAMER
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: GOL: 2.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

Alignment

TARGET    1       STPELRKT WLDSMAKIHI KNGDFSEAAM CYVHVAALVA EFLHRKKLFP
2wm9A     5       stpelrkt wldsmarihv kngdlseaam cyvhvtalva eyltrkgvfr
                                                                      
TARGET             hhhhhhh hhhhhhhhhh h   hhhhhh hhhhhhhhhh hhhhhh    
2wm9A              hhhhhhh hhhhhhhhhh h   hhhhhh hhhhhhhhhh hhhhhh    


TARGET    49    SGCSAFKKIT PNIDEEGAMK EDAGMMDVHY SEEVLLELLE QCVDGLWKAE
2wm9A     53    qgctafrvit pnideea--- ------dvhf nedvlmelle qcadglwkae
                                                                      
TARGET                 h    hhhh                  hhhhhhhhh hhhhhhhhh 
2wm9A                  h    hhhh                  hhhhhhhhh hhhhhhhhh 


TARGET    99    RYEVISEISK LIIPIYEKRR EFEKLTQVYR TLHGAYTKIL EVMHTKKRLL
2wm9A     103   ryeliadiyk liipiyekrr dferlahlyd tlhrayskvt evmhsgrrll
                                                                      
TARGET            hhhhhhhh hhhhhhh    hhhhhhhhhh hhhhhhhhhh hhhhh     
2wm9A                hhhhh hhhhhhh    hhhhhhhhhh hhhhhhhhhh hhhhh     


TARGET    149   GTFFRVAFYG QSFFEEEDGK EYIYKEPKLT GLSEISLRLV KLYGEKFGTE
2wm9A     153   gtyfrvaffg qgffededgk eyiykepklt plseisqrll klysdkfgse
                                                                      
TARGET           ssssssss  hhhh       ssssss      hhhhhhhhh hhhhhh    
2wm9A            ssssssss  hhhh       ssssss      hhhhhhhhh hhhhhh    


TARGET    199   NVKIIQDSDK VNAKELDPKF AHIQVTYVKP YFDDKELTER KTEFERNHNI
2wm9A     203   nvkmiqdsgk vnpkdldsky ayiqvthvip ffdekelqer ktefershni
                                                                      
TARGET          sssss                 ssssssssss s  hhhhhh    hhhh    
2wm9A           sssss                 ssssssssss s  hhhhhh    hhhh    


TARGET    249   NRFVFEAPYT LSGKKQGCIE EQCKRRTILT TSNSFPYVKK RIPINCEQQV
2wm9A     253   rrfmfempft qtgkrqggve eqckrrtilt aihcfpyvkk ripvmyqhht
                                                                      
TARGET          sssssssss              sssssssss ss       s ssssssssss
2wm9A           sssssssss               ssssssss ss       s ssssssssss


TARGET    299   NLKPIDVATD EIKDKTAELH KLCSSVDVDM IQLQLKLQGC VSVQVNAGPL
2wm9A     303   dlnpievaid emskkvaelr qlcssaevdm iklqlklqgs vsvqvnagpl
                                                                      
TARGET          sssshhhhhh hhhhhhhhhh hhhh     h hhhhhhhhhh h        h
2wm9A           ss hhhhhhh hhhhhhhhhh hhh      h hhhhhhh    h        h


TARGET    349   AYARAFLNES QANKYPPKKV NELKDMFRKF IQACSIALEL NERLIKEDQI
2wm9A     353   ayaraflddd n-------kv kllkevfrqf veacgqalav nerlikedql
                                                                      
TARGET          hhhhh        hhhh     hhhhhhhhhh hhhhhhhhhh hhhh      
2wm9A           hhhhh              hh hhhhhhhhhh hhhhhhhhhh hhhh      


TARGET    399   EYHEGLKSNF RDMVKELSDI IHEQI                           
2wm9A     403   eyqeemkany remakelsei mheql-                          
                                                                      
TARGET          hhhhhhhhhh hhhhhhhhhh h                               
2wm9A           hhhhhhhhhh hhhhhhhhhh h                               



Quality


Template's ligands section
Ligands in the template: GOL: 2.
The template contains ligands that are not yet part of the pipeline. Ligands which are currently assessed are listed in the help page.
No ligands were included in the model.


Quaternary Structure Annotation of the Template
2wm9 is annotated as HETERO TETRAMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 2wm9.pdb1.gz

Quaternary Structure Modelling of the Target Protein
2wm9_1


Template Selection
 - Start SMR-Pipeline for:5aea59aaf509f765d5c7861f7e96c744 on BC2-cluster at Tue May  7 17:17:59
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1
 - But still uncovered regions of the target sequence detected, go for: HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modified template library 
 - Summarize templates: 
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - Skip Template HHsearch issue
 - Skipping oligomeric state prediction due to too many templates for cluster: 164_272
 - Warning: Oligomer Prediction was not successfull!

 - Warning: clustersMergedFile not found
 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:3): model based on new templates
 - Send 3 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                                               ****************
 - building model based on 2wm9A (1613-2035) was successful 
 -       *****
 - building model based on 1wg7A (162-298) was successful 
 -                          *******
 - building model based on 3l4cB (640-820) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:5aea59aaf509f765d5c7861f7e96c744 on BC2-cluster at Tue May  7 17:47:01
2013 




Template Description
Match Chain SeqId

2wm9: STRUCTURE OF THE COMPLEX BETWEEN DOCK9 AND CDC42.
Solved by: X-RAY, Resolution: 2.20A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1613-2035 2wm9A 68%
[Model]

2wmn: STRUCTURE OF THE COMPLEX BETWEEN DOCK9 AND CDC42-GDP.
Solved by: X-RAY, Resolution: 2.39A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1613-2035 2wmnA 67%
[Model]

2wmo: STRUCTURE OF THE COMPLEX BETWEEN DOCK9 AND CDC42.
Solved by: X-RAY, Resolution: 2.20A, Identified by BLAST
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1613-2035 2wmoA 67%
[Model]

1wg7: SOLUTION STRUCTURE OF PLECKSTRIN HOMOLOGY DOMAIN FROM HUMAKIAA1058 PROTEIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

155-290 1wg7A 58%
[Model]

3vhl: CRYSTAL STRUCTURE OF THE DHR-2 DOMAIN OF DOCK8 IN COMPLEX (T17N MUTANT)
Solved by: X-RAY, Resolution: 2.08A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1760-2033 3vhlA 41%
[Model]

1eaz: CRYSTAL STRUCTURE OF THE PHOSPHOINOSITOL (3,4)-BISPHOSPHATBINDING PH DOMAIN OF TAPP1 FROM HUMAN.
Solved by: X-RAY, Resolution: 1.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-273 1eazA 27%
[Model]

1v89: SOLUTION STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN OF HUMAN KIAA0053 PROTEIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

161-275 1v89A 27%
[Model]

2dkp: SOLUTION STRUCTURE OF THE PH DOMAIN OF PLECKSTRIN HOMOLOGYDOMAIN-CONTAINING PROTEIN FAMILY A MEMBER 5 FROM HUMAN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-275 2dkpA 26%
[Model]

1zm0: CRYSTAL STRUCTURE OF THE CARBOXYL TERMINAL PH DOMAIN OF PLECKSTRIN TO 2.1 ANGSTROMS
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

163-272 1zm0B 25%
[Model]
164-272 1zm0A 25%
[Model]

1fao: STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM DAPP1/PHISH IN COMPLEX WITH INOSITOL 1,3,4,5- TETRAKISPHOSPHATE
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-272 1faoA 25%
[Model]

1qqg: CRYSTAL STRUCTURE OF THE PH-PTB TARGETING REGION OF IRS-1
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-271 1qqgB 25%
[Model]
166-271 1qqgA 25%
[Model]

2yry: SOLUTION STRUCTURE OF THE PH DOMAIN OF PLECKSTRIN HOMOLOGYDOMAIN-CONTAINING FAMILY A MEMBER 6 FROM HUMAN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

162-273 2yryA 25%
[Model]

2i5f: CRYSTAL STRUCTURE OF THE C-TERMINAL PH DOMAIN OF PLECKSTRIIN COMPLEX WITH D-MYO-INS(1,2,3,5,6)P5
Solved by: X-RAY, Resolution: 1.35A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

164-272 2i5fA 25%
[Model]

1upr: CRYSTAL STRUCTURE OF THE PEPP1 PLECKSTRIN HOMOLOGY DOMAIN IN COMPLEX WITH INOSITOL 1,3,4,5-TETRAKISPHOSPHATE
Solved by: X-RAY, Resolution: 2.27A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

164-271 1uprA 25%
[Model]

1upq: CRYSTAL STRUCTURE OF THE PLECKSTRIN HOMOLOGY (PH) DOMAIN OPEPP1
Solved by: X-RAY, Resolution: 2.27A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

164-271 1upqA 25%
[Model]

2i5c: CRYSTAL STRUCTURE OF THE C-TERMINAL PH DOMAIN OF PLECKSTRIIN COMPLEX WITH D-MYO-INS(1,2,3,4,5)P5
Solved by: X-RAY, Resolution: 1.75A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

166-271 2i5cB 25%
[Model]
166-271 2i5cA 25%
[Model]
166-271 2i5cC 25%
[Model]

1x05: SOLUTION STRUCTURE OF THE C-TERMINAL PH DOMAIN OF HUMAN PLECKSTRIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

164-275 1x05A 24%
[Model]

1fb8: STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM DAPP1/PHI
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

161-273 1fb8A 24%
[Model]

1xx0: STRUCTURE OF THE C-TERMINAL PH DOMAIN OF HUMAN PLECKSTRIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

163-274 1xx0A 24%
[Model]

4gzu: CRYSTAL STRUCURE OF THE DH-PH-PH DOMAIN OF FARP2
Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1611-1626 4gzuB 25%
[Model]
1611-1627 4gzuA 24%
[Model]

3rcp: CRYSTAL STRUCTURE OF THE FAPP1 PLECKSTRIN HOMOLOGY DOMAIN
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

169-275 3rcpA 24%
[Model]

3cxb: CRYSTAL STRUCTURE OF SIFA AND SKIP
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

167-272 3cxbB 24%
[Model]

1u5e: CRYSTAL STRUCTURE OF A N-TERMINAL FRAGMENT OF SKAP-HOM CONTAINING BOTH THE HELICAL DIMERIZATION DOMAIN AND THE PDOMAIN
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

164-272 1u5eB 22%
[Model]
164-272 1u5eA 23%
[Model]

2d9y: SOLUTION STRUCTURE OF THE PH DOMAIN OF PEPP-3 FROM HUMAN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

159-276 2d9yA 23%
[Model]

2cod: SOLUTION STRUCTURE OF THE N-TERMINAL PH DOMAIN OF ARAP2 PROTEIN FROM HUMAN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

161-274 2codA 23%
[Model]

1u5g: CRYSTAL STRUCTURE OF THE PH DOMAIN OF SKAP-HOM
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

164-272 1u5gA 22%
[Model]
164-272 1u5gD 22%
[Model]
164-273 1u5gC 23%
[Model]
164-273 1u5gB 23%
[Model]

1u5f: CRYSTAL STRUCTURE OF THE PH DOMAIN OF SKAP-HOM WITH 8 VECTOR-DERIVED N-TERMINAL RESIDUES
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-272 1u5fA 23%
[Model]

3hw2: CRYSTAL STRUCTURE OF THE SIFA-SKIP(PH) COMPLEX
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-272 3hw2B 23%
[Model]

2otx: CRYSTAL STRUCTURE OF A N-TERMINAL FRAGMENT OF SKAP-HOM CONTAINING BOTH THE HELICAL DIMERIZATION DOMAIN AND THE PDOMAIN
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

164-272 2otxB 22%
[Model]
164-272 2otxA 23%
[Model]

2dn6: SOLUTION STRUCTURE OF THE PH DOMAIN OF KIAA0640 PROTEIN FROM HUMAN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

160-274 2dn6A 22%
[Model]

2z0o: CRYSTAL STRUCTURE OF APPL1-BAR-PH DOMAIN
Solved by: X-RAY, Resolution: 2.58A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1833-1841 2z0oA 22%
[Model]

2j59: CRYSTAL STRUCTURE OF THE ARF1:ARHGAP21-ARFBD COMPLEX
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

167-275 2j59R 22%
[Model]
167-275 2j59M 22%
[Model]
167-275 2j59O 23%
[Model]
167-274 2j59N 22%
[Model]
167-274 2j59Q 22%
[Model]
167-274 2j59P 22%
[Model]

1u5d: CRYSTAL STRUCTURE OF THE PH DOMAIN OF SKAP55
Solved by: X-RAY, Resolution: 1.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

164-272 1u5dC 19%
[Model]
164-272 1u5dB 19%
[Model]
164-272 1u5dA 21%
[Model]
164-272 1u5dD 21%
[Model]

2r09: CRYSTAL STRUCTURE OF AUTOINHIBITED FORM OF GRP1 ARF GTPASEEXCHANGE FACTOR
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

162-275 2r09B 21%
[Model]
162-275 2r09A 21%
[Model]

3l4c: STRUCTURAL BASIS OF MEMBRANE-TARGETING BY DOCK180
Solved by: X-RAY, Resolution: 2.37A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

640-820 3l4cB 22%
[Model]
640-818 3l4cA 21%
[Model]

2da0: SOLUTION STRUCTURE OF THE PH DOMAIN OF PIP2-DEPENDENT ARF1GTPASE-ACTIVATING PROTEIN FROM HUMAN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

158-275 2da0A 21%
[Model]

2dhj: SOLUTION STRUCTURE OF THE PH DOMAIN OF RHO GTPASE ACTIVATING PROTEIN 21 FROM HUMAN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

163-275 2dhjA 21%
[Model]

3tca: CRYSTAL STRUCTURE OF THE RAS-ASSOCIATING AND PLECKSTRIN-HODOMAINS OF RIAM
Solved by: X-RAY, Resolution: 2.35A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

167-271 3tcaB 20%
[Model]
167-272 3tcaA 20%
[Model]

2r0d: CRYSTAL STRUCTURE OF AUTOINHIBITED FORM OF GRP1 ARF GTPASEEXCHANGE FACTOR
Solved by: X-RAY, Resolution: 2.04A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

164-275 2r0dB 20%
[Model]
164-275 2r0dA 20%
[Model]

1u2b: TRIGLYCINE VARIANT OF THE GRP1 PLECKSTRIN HOMOLOGY DOMAIN UNLIGANDED
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

167-275 1u2bA 20%
[Model]

1x1g: SOLUTION STRUCTURE OF THE C-TERMINAL PH DOMAIN OF HUMAN PLECKSTRIN 2
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

164-272 1x1gA 20%
[Model]

1wjm: SOLUTION STRUCTURE OF PLECKSTRIN HOMOLOGY DOMAIN OF HUMAN BETA III SPECTRIN.
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

161-275 1wjmA 20%
[Model]

1fhw: STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM GRP1 IN COMPLEX WITH INOSITOL(1,3,4,5,6)PENTAKISPHOSPHATE
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

167-275 1fhwA 22%
[Model]
168-275 1fhwB 20%
[Model]

2lul: SOLUTION NMR STRUCTURE OF PH DOMAIN OF TYROSINE-PROTEIN KIFROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS CONSORTITARGET HR3504C
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

162-277 2lulA 20%
[Model]

1fhx: STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM GRP1 IN COMPLEX WITH INOSITOL 1,3,4,5-TETRAKISPHOSPHATE
Solved by: X-RAY, Resolution: 2.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

167-275 1fhxA 21%
[Model]
167-275 1fhxB 20%
[Model]

1wi1: SOLUTION STRUCTURE OF THE PH DOMAIN OF HUMAN CALCIUM- DEPENDENT ACTIVATOR PROTEIN FOR SECRETION (CAPS)
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

161-276 1wi1A 19%
[Model]

3tfm: MYOSIN X PH1N-PH2-PH1C TANDEM
Solved by: X-RAY, Resolution: 2.53A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

162-275 3tfmA 19%
[Model]

1v5p: SOLUTION STRUCTURE OF THE N-TERMINAL PLECKSTRIN HOMOLOGY DOMAIN OF TAPP2 FROM MOUSE
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

169-274 1v5pA 19%
[Model]

1fgz: GRP1 PH DOMAIN (UNLIGANDED)
Solved by: X-RAY, Resolution: 2.05A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

167-275 1fgzA 19%
[Model]

1fgy: GRP1 PH DOMAIN WITH INS(1,3,4,5)P4
Solved by: X-RAY, Resolution: 2.05A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

167-275 1fgyA 19%
[Model]

1bwn: PH DOMAIN AND BTK MOTIF FROM BRUTON'S TYROSINE KINASE MUTANT E41K IN COMPLEX WITH INS(1,3,4,5)P4
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-275 1bwnA 18%
[Model]
165-275 1bwnB 19%
[Model]

2dhk: SOLUTION STRUCTURE OF THE PH DOMAIN OF TBC1 DOMAIN FAMILY MEMBER 2 PROTEIN FROM HUMAN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

164-273 2dhkA 19%
[Model]

1v5u: SOLUTION STRUCTURE OF THE C-TERMINAL PLECKSTRIN HOMOLOGY DOMAIN OF SBF1 FROM MOUSE
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

160-275 1v5uA 19%
[Model]

1pls: SOLUTION STRUCTURE OF A PLECKSTRIN HOMOLOGY DOMAIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

164-274 1plsA 19%
[Model]

2d9x: SOLUTION STRUCTURE OF THE PH DOMAIN OF OXYSTEROL BINDING PROTEIN-RELATED PROTEIN 11 FROM HUMAN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

161-276 2d9xA 18%
[Model]

1mph: PLECKSTRIN HOMOLOGY DOMAIN FROM MOUSE BETA-SPECTRIN, NMR, 50 STRUCTURES
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

169-270 1mphA 18%
[Model]

1b55: PH DOMAIN FROM BRUTON'S TYROSINE KINASE IN COMPLEX WITH INOSITOL 1,3,4,5-TETRAKISPHOSPHATE
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-277 1b55B 19%
[Model]
165-276 1b55A 18%
[Model]

2z0p: CRYSTAL STRUCTURE OF PH DOMAIN OF BRUTON'S TYROSINE KINASE
Solved by: X-RAY, Resolution: 2.58A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-276 2z0pA 19%
[Model]
165-275 2z0pB 18%
[Model]
165-275 2z0pD 18%
[Model]
165-275 2z0pC 18%
[Model]

1btn: STRUCTURE OF THE BINDING SITE FOR INOSITOL PHOSPHATES IN APH DOMAIN
Solved by: X-RAY, Resolution: 99.9A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

169-270 1btnA 18%
[Model]

3hk0: CRYSTAL STRUCTURE OF THE RA AND PH DOMAINS OF GRB10
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

166-273 3hk0A 16%
[Model]
167-273 3hk0B 18%
[Model]

2d9w: SOLUTION STRUCTURE OF THE PH DOMAIN OF DOCKING PROTEIN 2 FROM HUMAN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

163-272 2d9wA 18%
[Model]

2cof: SOLUTION STRUCTURE OF THE C-TERMINAL PH DOMAIN OF HYPOTHETICAL PROTEIN KIAA1914 FROM HUMAN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

161-276 2cofA 18%
[Model]

2y7b: CRYSTAL STRUCTURE OF THE PH DOMAIN OF HUMAN ACTIN-BINDING PROTEIN ANILLIN ANLN
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-273 2y7bA 18%
[Model]

2d9v: SOLUTION STRUCTURE OF THE PH DOMAIN OF PLECKSTRIN HOMOLOGYDOMAIN-CONTAINING PROTEIN FAMILY B MEMBER 1 FROM MOUSE
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

161-273 2d9vA 18%
[Model]

2kcj: SOLUTION STRUCTURE OF FAPP1 PH DOMAIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

166-274 2kcjA 17%
[Model]

4a6k: CRYSTAL STRUCTURE OF SLM1-PH DOMAIN IN COMPLEX WITH D-MYO-INOSITOL-4-PHOSPHATE
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

163-273 4a6kA 17%
[Model]
165-271 4a6kC 16%
[Model]
165-273 4a6kD 16%
[Model]
164-273 4a6kB 17%
[Model]

3pp2: CRYSTAL STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN OF ARH
Solved by: X-RAY, Resolution: 1.42A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

166-272 3pp2B 17%
[Model]
168-272 3pp2A 17%
[Model]

3aj4: CRYSTAL STRUCTURE OF THE PH DOMAIN OF EVECTIN-2 FROM HUMANWITH O-PHOSPHO-L-SERINE
Solved by: X-RAY, Resolution: 1.75A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

163-272 3aj4B 17%
[Model]
163-272 3aj4A 17%
[Model]

4gmv: CRYSTAL STRUCTURE OF THE COILED-COIL, RA AND PH DOMAINS OFLAMELLIPODIN
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

166-272 4gmvB 16%
[Model]
167-272 4gmvA 17%
[Model]

1u29: TRIGLYCINE VARIANT OF THE ARNO PLECKSTRIN HOMOLOGY DOMAIN IN COMPLEX WITH INS(1,4,5)P3
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

167-273 1u29A 17%
[Model]

1btk: PH DOMAIN AND BTK MOTIF FROM BRUTON'S TYROSINE KINASE MUTANT R28C
Solved by: X-RAY, Resolution: 1.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-276 1btkA 18%
[Model]
165-275 1btkB 17%
[Model]

3mdb: CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF FULL LENGTH CEALPHA-1, KIF13B FHA DOMAIN, AND IP4
Solved by: X-RAY, Resolution: 2.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

167-274 3mdbD 15%
[Model]
164-271 3mdbC 16%
[Model]
165-272 3mdbC 18%
[Model]
164-272 3mdbD 17%
[Model]

3via: CRYSTAL STRUCTURE OF THE PH DOMAIN OF EVECTIN-2 FROM HUMAN
Solved by: X-RAY, Resolution: 1.75A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

163-272 3viaB 17%
[Model]
163-272 3viaA 17%
[Model]

1u27: TRIGLYCINE VARIANT OF THE ARNO PLECKSTRIN HOMOLOGY DOMAIN IN COMPLEX WITH INS(1,3,4,5)P4
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

167-273 1u27A 17%
[Model]

2dhi: SOLUTION STRUCTURE OF THE PH DOMAIN OF EVECTIN-2 FROM MOUS
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

161-275 2dhiA 17%
[Model]

1v88: SOLUTION STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN OF OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 8 (KIAA1451 PROTEIN)
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

161-275 1v88A 17%
[Model]

2p0d: ARHGAP9 PH DOMAIN IN COMPLEX WITH INS(1,4,5)P3
Solved by: X-RAY, Resolution: 1.81A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-272 2p0dA 17%
[Model]

3fm8: CRYSTAL STRUCTURE OF FULL LENGTH CENTAURIN ALPHA-1 BOUND WITH THE FHA DOMAIN OF KIF13B (CAPRI TARGET)
Solved by: X-RAY, Resolution: 2.95A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

167-274 3fm8D 15%
[Model]
166-272 3fm8C 15%
[Model]
165-272 3fm8C 18%
[Model]
164-272 3fm8D 17%
[Model]

3feh: CRYSTAL STRUCTURE OF FULL LENGTH CENTAURIN ALPHA-1
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

166-272 3fehA 16%
[Model]
164-272 3fehA 17%
[Model]

1dro: NMR STRUCTURE OF THE CYTOSKELETON/SIGNAL TRANSDUCTION PROTEIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

162-274 1droA 17%
[Model]

4a6h: CRYSTAL STRUCTURE OF SLM1-PH DOMAIN IN COMPLEX WITH INOSITOL-4-PHOSPHATE
Solved by: X-RAY, Resolution: 1.45A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-272 4a6hD 17%
[Model]
164-271 4a6hB 17%
[Model]
164-271 4a6hA 17%
[Model]
165-271 4a6hC 17%
[Model]

2yin: STRUCTURE OF THE COMPLEX BETWEEN DOCK2 AND RAC1.
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1601-2034 2yinB 16%
[Model]
1601-2034 2yinA 16%
[Model]

4bbk: STRUCTURAL AND FUNCTIONAL CHARACTERISATION OF THE KINDLIN-PLECKSTRIN HOMOLOGY DOMAIN
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

185-272 4bbkA 16%
[Model]

4gn1: CRYSTAL STRUCTURE OF THE RA AND PH DOMAINS OF LAMELLIPODIN
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

167-271 4gn1A 17%
[Model]
167-271 4gn1B 17%
[Model]
167-271 4gn1C 16%
[Model]
167-271 4gn1D 16%
[Model]

2coc: SOLUTION STRUCTURE OF THE C-TERMINAL PH DOMAIN OF FYVE, RHOGEF AND PH DOMAIN CONTAINING PROTEIN 3 (FGD3) FROM HUM
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

161-275 2cocA 16%
[Model]

3lju: CRYSTAL STRUCTURE OF FULL LENGTH CENTAURIN ALPHA-1 BOUND WGROUP OF PIP3
Solved by: X-RAY, Resolution: 1.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

166-273 3ljuX 15%
[Model]
164-273 3ljuX 16%
[Model]

4h6y: CRYSTAL STRUCURE OF THE DH-PH-PH DOMAIN OF FARP1
Solved by: X-RAY, Resolution: 4.09A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1611-1626 4h6yB 19%
[Model]
1610-1628 4h6yA 16%
[Model]

3b13: CRYSTAL STRUCTURE OF THE DHR-2 DOMAIN OF DOCK2 IN COMPLEX (T17N MUTANT)
Solved by: X-RAY, Resolution: 3.01A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1600-2034 3b13C 16%
[Model]
1600-2034 3b13A 16%
[Model]

4a6f: CRYSTAL STRUCTURE OF SLM1-PH DOMAIN IN COMPLEX WITH PHOSPH
Solved by: X-RAY, Resolution: 1.68A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-273 4a6fB 16%
[Model]
165-272 4a6fA 16%
[Model]

3a8p: CRYSTAL STRUCTURE OF THE TIAM2 PHCCEX DOMAIN
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

166-275 3a8pA 15%
[Model]
166-275 3a8pB 15%
[Model]
166-277 3a8pC 14%
[Model]
164-274 3a8pD 16%
[Model]

2rsg: SOLUTION STRUCTURE OF THE CERT PH DOMAIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

166-271 2rsgA 16%
[Model]

2p0f: ARHGAP9 PH DOMAIN IN COMPLEX WITH INS(1,3,5)P3
Solved by: X-RAY, Resolution: 1.91A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-272 2p0fA 15%
[Model]

3nsu: A SYSTEMATIC SCREEN FOR PROTEIN-LIPID INTERACTIONS IN SACCCEREVISIAE
Solved by: X-RAY, Resolution: 2.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

164-272 3nsuB 18%
[Model]
165-272 3nsuA 15%
[Model]

2rlo: SPLIT PH DOMAIN OF PI3-KINASE ENHANCER
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

167-272 2rloA 15%
[Model]

3a8q: LOW-RESOLUTION CRYSTAL STRUCTURE OF THE TIAM2 PHCCEX DOMAI
Solved by: X-RAY, Resolution: 3.20A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

166-275 3a8qB 15%
[Model]
166-275 3a8qA 15%
[Model]
166-275 3a8qD 15%
[Model]
166-275 3a8qC 15%
[Model]

4a5k: STRUCTURAL ANALYSES OF SLM1-PH DOMAIN DEMONSTRATE LIGAND BINDING IN THE NON-CANONICAL SITE
Solved by: X-RAY, Resolution: 1.76A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-271 4a5kA 15%
[Model]
165-271 4a5kD 16%
[Model]
165-271 4a5kC 16%
[Model]
165-271 4a5kB 15%
[Model]

2p0h: ARHGAP9 PH DOMAIN IN COMPLEX WITH INS(1,3,4)P3
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-272 2p0hA 15%
[Model]

3a8n: CRYSTAL STRUCTURE OF THE TIAM1 PHCCEX DOMAIN
Solved by: X-RAY, Resolution: 4.50A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-274 3a8nA 15%
[Model]

1v5m: SOLUTION STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN OF MOUSE APS
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

165-275 1v5mA 15%
[Model]

4f7h: THE CRYSTAL STRUCTURE OF KINDLIN-2 PLECKSTRIN HOMOLOGY DOMFORM
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

169-270 4f7hA 12%
[Model]

3ml4: CRYSTAL STRUCTURE OF A COMPLEX BETWEEN DOK7 PH-PTB AND THEJUXTAMEMBRANE REGION
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

164-269 3ml4D 12%
[Model]
163-269 3ml4B 11%
[Model]
164-269 3ml4A 12%
[Model]
164-269 3ml4C 12%
[Model]

2lko: STRUCTURAL BASIS OF PHOSPHOINOSITIDE BINDING TO KINDLIN-2 HOMOLOGY DOMAIN IN REGULATING INTEGRIN ACTIVATION
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

169-271 2lkoA 12%
[Model]

1wgq: SOLUTION STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN OF MOUSE ETHANOL DECREASED 4 PROTEIN
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

160-274 1wgqA 12%
[Model]

2dtc: CRYSTAL STRUCTURE OF MS0666
Solved by: X-RAY, Resolution: 1.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

167-274 2dtcB 9%
[Model]
167-274 2dtcA 9%
[Model]

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Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.