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SWISS-MODEL Repository - Model Details

Model Overview

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346

Sequence

UniProt

A2AKE7

Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain

Link to: [ InterPro ]

Actin

Model 3D Structure

	Model information:
	Modelled residue range:	37 to 341
	Based on template:	[ 3ci5 ]
	Sequence Identity [%]:	35%
	Model date:	2013-02-22
	Revision date:	2013-01-30

Quaternary structure information:	[details]
Template (3ci5): HETERO DIMER Model built :SINGLE CHAIN

Ligand information:	[details]
Ligands in the template: ALA: 1, ATP: 1, GOL: 1, SO4: 9. Ligands in the model: none.

Template Links: [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]

Alignment


                                                       
3ci5A     4     dvqalvidng sgmckagfag ddapravfps ivgrprhtgm gqkdsxvgde
                                                                      
                                                       
3ci5A              sssssss  ssssssss       sssss ssssss          ssshh


TARGET    1                   HPIKHGV VVDWDALEGL WERLMVGGLQ VHPEQWPVLV
3ci5A     58    aqskrgiltl k--ypie-gi vtnwddmeki whhtfynelr vapeehpvll
                                                                      
TARGET                         sss  s ss hhhhhhh hhhhhhhh          sss
3ci5A           hhh   ssss s   sss  s ss hhhhhhh hhhhhhhh         ssss


TARGET    38    SDSPSAPPKG REKVAELLFE ALTVPACHMA NTALLALCSI GAFSGLAVEA
3ci5A     106   teaplnpkan rekmtqimfe tfntpamyva iqavlslyas grttgivmds
                                                                      
TARGET          ss     hhh hhhhhhhhhh h   ssssss sshhhhhhh    ssssssss
3ci5A           ss     hhh hhhhhhhhhh h   ssssss sshhhhhhh    ssssssss


TARGET    88    GAGVCHATPI YAGHSWHKAT FRLNVAGSTL SRYFRDLLVA ACPDLQLQGL
3ci5A     156   gdgvshtvpi yegyalphai lrldlagrdl tdymmkilte rgysfttta-
                                                                      
TARGET              ssssss ss sss     sss   hhhh hhhhhhhhhh           
3ci5A               ssssss ss sss     sss   hhhh hhhhhhhhhh        hh 


TARGET    138   SRKTVTQLKK RCCYVSLDFQ GDICDPARHQ --RACFCLGN GCYVRLGSER
3ci5A     205   ereivrdike klayvaldfe aemqtaasss aleksyelpd gqvitigner
                                                                      
TARGET           hhhhhhhhh h       hh hhhhhh          sss    sss      
3ci5A           hhhhhhhhhh h       hh hhhhhhhh      sssss    sssss  hh


TARGET    186   FRCPEPIFQP SLLGHPEPGL PTLAFQALQK IPTTLRTRLA NTVVLAGGST
3ci5A     255   frcpealfqp sflgmesagi hettynsimk cdvdirkdly gnvvlsggtt
                                                                      
TARGET           hhhhhh    hh       h hhhhhhhhh       hhhhh  sssss  hh
3ci5A           hh   hhh            h hhhhhhhhh        hhhh  sssss  hh


TARGET    236   LFPGFVERMN LELEAQCRRH GYPALQPCLV AHPGRDTAVW TGGSMMASLN
3ci5A     305   mfpgiadrmn keltalaps- ---tmkikii apperkysvw iggsilasls
                                                                      
TARGET              hhhhhh hhhhhh            sss        hhh hhhhhhh   
3ci5A               hhhhhh hhhhhh            sss    hh   hh hhhhhhh   


TARGET    286   SFQCRWMTRA MYQEHGPLLV  ----                           
3ci5A     351   tfqqmwiske eydesgpsiv hrkcf                           
                                                                      
TARGET          hh    sssh hhhh   hh                                  
3ci5A           hh    sssh hhhh   hhh hhh

Quality

[ start new quality assessment in Workspace ]

Ligand Modelling Log

Template's ligands section 
Ligands in the template: ALA: 1, ATP: 1, GOL: 1, SO4: 9. 
Ligands in the template that will be assessed: ATP401. 
Model's ligands section 
ATP401 
Not all the residues interacting with the ligand are completely conserved between model and template. 
No RMSD calculation will be performed. 
Given the properties calculated previously, the ligand A.ATP401 will not be included in the model. 
ATP401: conservation:False, RMSD:False, included: False 
 
No ligands were included in the model.

Oligomer Modelling Log

Quaternary Structure Annotation of the Template
3ci5 is annotated as HETERO DIMER
The oligomeric state of the structure was assigned by the authors of the corresponding PDB entry
The following biological unit was used to build the template structure: 3ci5.pdb1.gz

Quaternary Structure Modelling of the Target Protein
3ci5_1

Template Selection

 - Start SMR-Pipeline for:6ed0146d93243e4a59608fa39825a416 on BC2-cluster at Fri Feb 22 18:12:36
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
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 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:2): model based on new templates
 - Send 2 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -          ***********************************************************************
 - building model based on 3ci5A (37-341) was successful 
 -  *************************************************************************
 - building model based on 4b9qC (6-320) was not successful go to next best template
 -  *************************************************************************
 - building model based on 4b9qA (6-320) was not successful go to next best template
 -  *************************************************************************
 - building model based on 4b9qD (6-320) was not successful go to next best template
 -  *************************************************************************
 - building model based on 4b9qB (6-320) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:6ed0146d93243e4a59608fa39825a416 on BC2-cluster at Fri Feb 22 18:19:13
2013

Template Search

[ start new template identification in Workspace ]

Template Description

Match

Chain

SeqId

3qb0: CRYSTAL STRUCTURE OF ACTIN-RELATED PROTEIN ARP4 FROM S. CECOMPLEXED WITH ATP
Solved by: X-RAY, Resolution: 3.40A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

2-346	3qb0A	19%	>target -------------------------KPRIVLKSSSLMPSW---DRPVLPGAPGCELAGGVARAHPIKHGVVVDWDALEGLWERLMVGGLQVHPEQ-WPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAFSGLAVEAGAGVCHATPIYAGHSWHKATFRLNVAGSTLSRYFRDLLVAACPDLQ------------------------LQGLSRKTVTQLKKRCCYVSLDFQGDICDP--ARHQRACFCLGNGCYVRL-GSERFRCPEPIFQPSLLGH---------------------------PEPGLPTLAFQALQKIPTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHGYPALQPCLVAHP---GRDTAVWTGGSMMASLNSFQCRWMTRAMYQEHGP-LLVRDVFD >3qb0A GGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILPS-----LKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRFR [Model]
2-346	3qb0B	19%	>target ---------------------------KPRIVLKSSSLMPSW---DRPVLPGAPGCELAGGVARAHPIKHGVVVDWDALEGLWERLMVGGLQVHPEQ-WPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAFSGLAVEAGAGVCHATPIYAGHSWHKATFRLNVAGSTLSRYFRDLLVAACPDLQ------------------------LQGLSRKTVTQLKKRCCYVSLDFQGDICDP--ARHQRACFCLGNGCYVRLGS-ERFRCPEPIFQPSLLGH----------------------------PEPGLPTLAFQALQKIPTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHGYPALQPCLVAHP---GRDTAVWTGGSMMASLNSFQCRWMTRAMYQEHGPL-LVRDVFD >3qb0B VYGGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKPNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILPS-----LKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRFR [Model]
2-346	3qb0C	19%	>target ---------------------------KPRIVLKSSSLMPSW---DRPVLPGAPGCELAGGVARAHPIKHGVVVDWDALEGLWERLMVGGLQVHPEQ-WPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAFSGLAVEAGAGVCHATPIYAGHSWHKATFRLNVAGSTLSRYFRDLLVAACPDLQ------------------------LQGLSRKTVTQLKKRCCYVSLDFQGDICDP--ARHQRACFCLGNGCYVRL-GSERFRCPEPIFQPSLLGH----------------------------PEPGLPTLAFQALQKIPTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHGYPALQPCLVAHP---GRDTAVWTGGSMMASLNSFQCRWMTRAMYQEHGP-LLVRDVFD >3qb0C VYGGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKNNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILPS-----LKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRFR [Model]
2-346	3qb0D	19%	>target -------------------------KPRIVLKSSSLMPSW---DRPVLPGAPGCELAGGVARAHPIKHGVVVDWDALEGLWERLMVGGLQVHPEQ-WPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAFSGLAVEAGAGVCHATPIYAGHSWHKATFRLNVAGSTLSRYFRDLLVAACPDLQ------------------------LQGLSRKTVTQLKKRCCYVSLDFQGDICDP--ARHQRACFCLGNGCYVRLG-SERFRCPEPIFQPSLLGH------------------------------PEPGLPTLAFQALQKIPTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHGYPALQPCLVAHP---GRDTAVWTGGSMMASLNSFQCRWMTRAMYQEHGP-LLVRDVFD >3qb0D GGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRTKPENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILPS-----LKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRFR [Model]

4gni: STRUCTURE OF THE SSZ1 ATPASE BOUND TO ATP AND MAGNESIUM
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	48-320	4gniA	12%	>target --------------------------------------------------------------------------------------------------------------------DALEGLWERLMV---GGLQVHPEQWPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGA--FSGLAVEAGAGVCHATPIYAGHSWHK--A-TFRLNVAGSTLSRYFRDLLVAAC-------PDLQLQGLS----RKTVTQLKKRCCYVSLDFQGDICDPARHQRACFCL---GNGC--YVRLGSERFRCPEPIFQPSLLGHPEPGLPTLAFQALQKIPTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHGYPALQPCLVAHPGRDTAVWTGGSMMASL--- >4gniA RVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDPTHNHASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVT--SAVITIPTNFTEKQKAALIAA-AAAADLEVLQLISEPAAAVLAYDASDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRS--------------TNASFSVESLIDGLDFASTINRLRY---ETIART-----VFEGFNRLVESAVKKAGL--DPLDVDEVIMSGGTSNTPRIAANFRYIFPESTR-ILA---PSTDPSALNPSELQARGAALQASLIQE [Model]
	48-320	4gniB	12%	>target ---------------------------------------------------------------------------------------------------------------------DALEGLWERLMV---GGLQVHPEQWPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAF-SGLAVEAGAGVCHATPIYAGH-SWH-KA-TFRLNVAGSTLSRYFRDLLVAA----CPD---LQLQGL----SRKTVTQLKKRCCYVSLDFQGDICDPARHQRACFC---LGNGCY--VRLGSERFRCPEPIFQPSLLGHPEPGLPTLAFQALQKIPTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHGYPALQPCLVAHPGRDTAVWTGGSMMASL-- >4gniB ERVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDPTHNHASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVT--SAVITIPTNFTEKQKAALIAAA-AAADLEVLQLISEPAAAVLAYDSDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSR--------------STNASFSVESLIDGLDFASTINRLRY---ETIART-----VFEGFNRLVESAVKKAGLD--PLDVDEVIMSGGTSNTPRIAANFRYIFPESTRIL-A---PSTDPSALNPSELQARGAALQASLIQ [Model]

1dkg: CRYSTAL STRUCTURE OF THE NUCLEOTIDE EXCHANGE FACTOR GRPE BOUND TO THE ATPASE DOMAIN OF THE MOLECULAR CHAPERONE DNA
Solved by: X-RAY, Resolution: 2.80A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

6-320

1dkgD

10%

[Model]

4b9q: OPEN CONFORMATION OF ATP-BOUND HSP70 HOMOLOG DNAK
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

6-320	4b9qC	10%	>target ---------------------------------VLKSSSLMPSWDRPVLPGAPGCELA---GGV---ARA------------------HPI-----KHGVV---------VDWDALEGLWERLMV---GGLQVHPEQWPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAFSGLAVEAGAGVCHATPIY------AGHSW-HKATFRLNVAGSTLSRYFRDLLVAA-----CPDLQLQGLS----RKTVTQLKKRCCYVSLDFQGDICDPARHQRACFCLGN-G--CYVRLGSERFRCPEPIFQPSLLGHPEPGLPTLAFQALQKIPTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHGYPALQPCLVAHPGRDTAVWTGGSMMASL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ >4b9qC GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGC-TLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPV--TEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAYGR-TIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQ---TDV-----NLPYITADATGPKHMNIKVTRAKL---ESLVED-----LVNRSIEPLKVALQDAGLS--VSDIDDVILVGGQTRMPMVQKKVAEFFG----K--------EPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQ [Model]
6-320	4b9qB	10%	>target ---------------------------------VLKSSSLMPSWDRPVLPGAPGCELAG---GV---ARA------------------HPI-----KHGVV--------VD-WDALEGLWERLMV---GGLQVHPEQWPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGA---FSGLAVEAGAGVCHATPIY------AGHS-WHKATFRLNVAGSTLSRYFRDLLVAA-----CPDLQLQGLS----RKTVTQLKKRCCYVSLDFQGDICDPARHQRACFCLGN-G--CYVRLGSERFRCPEPIFQPSLLGHPEPGLPTLAFQALQKIPTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHGYPALQPCLVAHPGRDTAVWTGGSMMASL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4b9qB GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGC-TLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPV--TEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAYGLDGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQ---TDV-----NLPYITADATGPKHMNIKVTRAKL---ESLVED-----LVNRSIEPLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFG----K--------EPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGIRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQ [Model]
6-320	4b9qA	10%	>target ---------------------------------VLKSSSLMPSWDRPVLPGAPGCELAG---GV---ARA------------------HP-----IKHGVV---V-----D-WDALEGLWERLMV---GGLQVHPEQWPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAF------SGLAVEAGAGVCHATPIY------AGHS-WHKATFRLNVAGSTLSRYFRDLLVAA-----CPDLQLQGLS----RKTVTQLKKRCCYVSLDFQGDICDPARHQRACFCLGN---GCYVRLGSERFRCPEPIFQPSLLGHPEPGLPTLAFQALQKIPTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHGYPALQPCLVAHPGRDTAVWTGGSMMASL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4b9qA GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGC-TLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEP--VTEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQ---TDV-----NLPYITADATGPKHMNIKVTRAKL---ESLVED-----LVNRSIEPLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFGK------------EPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIA [Model]
6-320	4b9qD	10%	>target ---------------------------------VLKSSSLMPSWDRPVLPGAPGCELA---GGV---ARA------------------HPI-----KHGVVV--------D-WDALEGLWERLMV---GGLQVHPEQWPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIG--AFSGLAVEAGAGVCHATPIY------AGHS-WHKATFRLNVAGSTLSRYFRDLLVAA-----CPDLQLQGLS----RKTVTQLKKRCCYVSLDFQGDICDPARHQRACFCLGN---GCYVRLGSERFRCPEPIFQPSLLGHPEPGLPTLAFQALQKIPTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHGYPALQPCLVAHPGRDTAVWTGGSMMASL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- >4b9qD GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGC-TLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPV--TEAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAYGLGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQ---TDVN-----LPYITADATGPKHMNIKVTRAKL---ESLVED-----LVNRSIEPLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFGK------------EPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGIGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQ [Model]

4am7: ADP-BOUND C-TERMINAL DOMAIN OF ACTIN-RELATED PROTEIN ARP8 CEREVISIAE
Solved by: X-RAY, Resolution: 3.25A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	18-345	4am7A	10%	>target --------------------------------------------------------------------------------------------------------------------------RPVLPGAPGCELA-GGVARAHPIKHGVVV-----------DWDALEGLWERLMVG-GLQVHPEQ---WPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAFS-GLAVEAGAGVCHATPIYAGHSWHKATFRLNVAGSTLSRYFRDLLVAACPDLQL----QGLSRKTVTQLKKRCCYVSLDFQGDICDPARHQRACFCLGNGCYVRLGSERFRCPEPIFQPSLLGHP-------------------------------------------------------------------------------EPGLPTLAFQALQKI----PTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHG---------------------------------------------------------------YPALQPCLVAHP---GRDTAVWTGGSMMASLNSFQCRWMTRAMYQEHGPLLVRDVF---- >4am7A EIDLNDPTATIVIHPGSNSIKIGFPKDDHPVVVPNCVAVPKKWLDLENSEHVENVCLQREQSEEFNNIKSEMEKNFRERMRYYKRKVPGNAHEQVVSFNENSKPEIISEKNDPSPIEWIFDDSKLYYGSDALRCVDEKFVIRKPFRGGSFNVKSPYYKSLAELISDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVVNIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFTTFQDADVAVQ-LYNFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELNDWNSLSQFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFYSNILIVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEELEEQHQNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGSRILQYKCIFTY [Model]
	18-345	4am7B	10%	>target --------------------------------------------------------------------------------------------------------------------------RPVLPGAPGCELA-GGVARAHPIKHGVVV-----------DWDALEGLWERLMVG-GLQVHPEQ---WPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAFS-GLAVEAGAGVCHATPIYAGHSWHKATFRLNVAGSTLSRYFRDLLVAACPDLQL----QGLSRKTVTQLKKRCCYVSLDFQGDICDPARHQRACFCLGNGCYVRLGSERFRCPEPIFQPSLLGHP-------------------------------------------------------------------------------EPGLPTLAFQALQKI----PTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHG---------------------------------------------------------------YPALQPCLVAHP---GRDTAVWTGGSMMASLNSFQCRWMTRAMYQEHGPLLVRDVF---- >4am7B EIDLNDPTATIVIHPGSNSIKIGFPKDDHPVVVPNCVAVPKKWLDLENSEHVENVCLQREQSEEFNNIKSEMEKNFRERMRYYKRKVPGNAHEQVVSFNENSKPEIISEKNDPSPIEWIFDDSKLYYGSDALRCVDEKFVIRKPFRGGSFNVKSPYYKSLAELISDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVVNIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFTTFQDADVAVQ-LYNFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELNDWNSLSQFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFYSNILIVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEELEEQHQNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGSRILQYKCIFTY [Model]

2kho: NMR-RDC / XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE(1-605) COMPLEXED WITH ADP AND SUBSTRATE
Solved by: NMR, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

6-320

2khoA

10%

>target-------------------------------VLKSSSLMPSWDRPVLPGAPGCELAG---GV---ARA------------------HPI-----KHGVV--------VDW-DALEGLWERLMV---GGLQVHPEQWPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAF------SGLAVEAGAGVCHATPIY------AGHS-WHKATFRLNVAGSTLSRYFRDLLVAA-----CPDLQLQGLS----RKTVTQLKKRCCYVSLDFQGDICDPARHQRACFCLGN---GCYVRLGSERFRCPEPIFQPSLLGHPEPGLPTLAFQALQKIPTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHGYPALQPCLVAHPGRDTAVWTGGSMMASL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------>2khoAIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGE-TLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEP--VTEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQ---TDV-----NLPYITADATGPKHMNIKVTRAKLE---SLVED-----LVNRSIEPLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFGK------------EPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQ

[Model]

4am6: C-TERMINAL DOMAIN OF ACTIN-RELATED PROTEIN ARP8 FROM S. CE
Solved by: X-RAY, Resolution: 3.25A, Identified by HHSEARCH
[ SMTL ] [ RCSB ] [ PDBe ] [ SCOP ] [ CATH ]

	18-345	4am6A	10%	>target --------------------------------------------------------------------------------------------------------------------------RPVLPGAPGCELA-GGVARAHPIKHGVVV-----------DWDALEGLWERLMVG-GLQVHPEQ---WPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAFS-GLAVEAGAGVCHATPIYAGHSWHKATFRLNVAGSTLSRYFRDLLVAACPDLQL----QGLSRKTVTQLKKRCCYVSLDFQGDICDPARHQRACFCLGNGCYVRLGSERFRCPEPIFQPSLLGHP-------------------------------------------------------------------------------EPGLPTLAFQALQKI----PTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHG---------------------------------------------------------------YPALQPCLVAHP---GRDTAVWTGGSMMASLNSFQCRWMTRAMYQEHGPLLVRDVF---- >4am6A EIDLNDPTATIVIHPGSNSIKIGFPKDDHPVVVPNCVAVPKKWLDLENSEHVENVCLQREQSEEFNNIKSEMEKNFRERMRYYKRKVPGNAHEQVVSFNENSKPEIISEKNDPSPIEWIFDDSKLYYGSDALRCVDEKFVIRKPFRGGSFNVKSPYYKSLAELISDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVVNIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFTTFQDADVAVQ-LYNFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELNDWNSLSQFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFYSNILIVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEELEEQHQNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGSRILQYKCIFTY [Model]
	18-345	4am6B	10%	>target --------------------------------------------------------------------------------------------------------------------------RPVLPGAPGCELA-GGVARAHPIKHGVVV-----------DWDALEGLWERLMVG-GLQVHPEQ---WPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAFS-GLAVEAGAGVCHATPIYAGHSWHKATFRLNVAGSTLSRYFRDLLVAACPDLQL----QGLSRKTVTQLKKRCCYVSLDFQGDICDPARHQRACFCLGNGCYVRLGSERFRCPEPIFQPSLLGHP-------------------------------------------------------------------------------EPGLPTLAFQALQKI----PTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHG---------------------------------------------------------------YPALQPCLVAHP---GRDTAVWTGGSMMASLNSFQCRWMTRAMYQEHGPLLVRDVF---- >4am6B EIDLNDPTATIVIHPGSNSIKIGFPKDDHPVVVPNCVAVPKKWLDLENSEHVENVCLQREQSEEFNNIKSEMEKNFRERMRYYKRKVPGNAHEQVVSFNENSKPEIISEKNDPSPIEWIFDDSKLYYGSDALRCVDEKFVIRKPFRGGSFNVKSPYYKSLAELISDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVVNIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFTTFQDADVAVQ-LYNFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELNDWNSLSQFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFYSNILIVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEELEEQHQNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGSRILQYKCIFTY [Model]

Downloads

download model.tgz

Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.