SWISS-MODEL Repository - Model Details

Model Overview
Sequence
UniProt A2AVA0
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
A2AVA0: 10090.ENSMUSP000

Domain
Link to: [ InterPro ]
EGF
EGF
EGF
EGF
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
Sushi
VWA
Pentaxin
HYR
HYR
EGF_CA
EGF_CA
GCC2_GCC3
GCC2_GCC3
GCC2_GCC3
GCC2_GCC3

Model 3D Structure
Model information:
Modelled residue range: 1267 to 1380
Based on template: [ 1toz ]  
Sequence Identity [%]: 48%
Model date: 2013-02-22
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (1toz): MONOMER
Model built: SINGLE CHAIN

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1       ENIN--EC ISSPCLNKGT CTDGLASYRC TCVKGYMGVH CETDVNECQS
1tozA     411     qdvdecsl ganpcehagk cintlgsfec qclqgytgpr ceidvnecvs
                                                                      
TARGET                              s ssss  ssss s                 hhh
1tozA                               s ssss  ssss s                    


TARGET    47    SPCLNNAVCK DQVGGFSCKC PPGFLGTRCE KNVDECLSQP CQNGATCKDG
1tozA     459   npcqndatcl dqigefqcic mpgyegvhce vntdecassp clhngrcldk
                                                                      
TARGET                 sss ss  sssss                             sssss
1tozA                  sss ss  sssss                             sssss


TARGET    97    ANSFRCQCPA GFTGTHCE                                   
1tozA     509   inefqcecpt gftghlcq-                                  
                                                                      
TARGET            sssss                                               
1tozA             sssss

Quality 


Template's ligands section 
Template without ligands. 
No ligands were included in the model.

 
Quaternary Structure Annotation of the Template 
 1toz is annotated as MONOMER 
 The template structure (1toz) was solved by NMR and does not contain any quaternary structure annotation 
 The template is annotated by the number of chains found in the PDB file 
      
 
Quaternary Structure Modelling of the Target Protein 
 The target and template sequences are too diverse (seqid: 48.276) to infer a conservation of the oligomeric state 
 Please use the advancend features of the SwissModel Project Mode 
       
 The target structure was calculated as SINGLE CHAIN

Template Selection 
 - Start SMR-Pipeline for:4e72911f5485d83bba95d099e899b17c on BC2-cluster at Fri Feb 22 13:55:05
2013 


 - Analyze BLAST summary ... 
 - No templates found with BLAST (seqid-cutoff: 60): go to HHSEARCH

 - Run HHSearch to detect more templates...
FATAL - No md5 found in hash for: 4f1jB
FATAL - No md5 found in hash for: 4f1jA
FATAL - No md5 found in hash for: 4f1kB
FATAL - No md5 found in hash for: 4f1kA
 - Generate new template library
 - Run template selection against modfied template library 
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 - No template with C found
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 - No template with B found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with C found
 - No template with A found
 - No template with B found
 - No template with C found
 - Warning: Oligomer Prediction was not successfull!

 - Proof template(s) selection compared to previous Repository update
 - Different number of templates selected (old0 vs new:82): model based on new templates
 - Send 82 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                             ***
 - building model based on 1tozA (1267-1380) was successful 
 -                             ***
 - building model based on 2vj3A (1230-1342) was successful 
 -                              ***
 - building model based on 1tozA (1306-1418) was successful 
 -                                                                               *
 - building model based on 2wfxB (3500-3550) was successful 
 -                            ***
 - building model based on 1tozA (1191-1304) was successful 
 -                                                                               **
 - building model based on 2ygqA (3465-3559) was successful 
 -                                  ***
 - building model based on 3flpH (1475-1607) was successful 
 -                                                                ***
 - building model based on 1vvcA (2828-2941) was not successful go to next best template
 -                                                                ***
 - building model based on 1vvdA (2828-2941) was not successful go to next best template
 -                                                                ***
 - building model based on 1vveA (2828-2941) was not successful go to next best template
 -                                                                ***
 - building model based on 1h04P (2830-2942) was successful 
 -                                                                  **
 - building model based on 1nwvA (2910-2999) was successful 
 -                                          ***
 - building model based on 1e5gA (1846-1959) was successful 
 -        **
 - building model based on 2x10A (305-385) was successful 
 -                                                **
 - building model based on 1h03P (2104-2198) was not successful go to next best template
 -                                                **
 - building model based on 1h03Q (2104-2198) was not successful go to next best template
 -                                                **
 - building model based on 1h04P (2104-2198) was not successful go to next best template
 -                                                **
 - building model based on 1h2pP (2104-2198) was not successful go to next best template
 -                                                **
 - building model based on 1uotP (2104-2198) was not successful go to next best template
 -                                                **
 - building model based on 1e5gA (2104-2199) was successful 
 -                                            **
 - building model based on 1zjkA (1904-2011) was successful 
 -                                                 ***
 - building model based on 1vvcA (2143-2255) was not successful go to next best template
 -                                                 ***
 - building model based on 1vvdA (2143-2255) was not successful go to next best template
 -                                                 ***
 - building model based on 1vveA (2143-2255) was not successful go to next best template
 -                                                 ***
 - building model based on 1e5gA (2144-2255) was successful 
 -                                      **
 - building model based on 1h03P (1650-1742) was successful 
 -                                                        ***
 - building model based on 1h03P (2439-2550) was not successful go to next best template
 -                                                        ***
 - building model based on 1h03Q (2439-2550) was not successful go to next best template
 -                                                        ***
 - building model based on 1uotP (2439-2550) was not successful go to next best template
 -                                                        ***
 - building model based on 1h2qP (2439-2550) was not successful go to next best template
 -                                                        ***
 - building model based on 1h04P (2439-2550) was not successful go to next best template
 -                             ***
 - building model based on 2w86A (1230-1375) was successful 
 -                                         ***
 - building model based on 1gkgA (1783-1899) was not successful go to next best template
 -                                         ***
 - building model based on 3erbA (1780-1899) was successful 
 -                                                      ***
 - building model based on 1h2qP (2380-2493) was successful 
 -                                                                 **
 - building model based on 1h2pP (2848-2942) was successful 
 -                                                              **
 - building model based on 1h2qP (2733-2825) was not successful go to next best template
 -                                                              **
 - building model based on 1h03P (2733-2825) was not successful go to next best template
 -                                                        ***
 - building model based on 1h2pP (2439-2550) was not successful go to next best template
 -                                                        ***
 - building model based on 1hfhA (2437-2550) was not successful go to next best template
 -                                                                   **
 - building model based on 1h03P (2945-3053) was successful 
 -                                                                 ****
 - building model based on 3erbA (2836-2999) was successful 
 -                                                                          **
 - building model based on 1h2qP (3255-3349) was successful 
 -                                                               ***
 - building model based on 1e5gA (2772-2883) was successful 
 -                                                        ***
 - building model based on 1e5gA (2439-2550) was not successful go to next best template
 -                                                         **
 - building model based on 1h03P (2497-2607) was successful 
 -                                                              **
 - building model based on 1h03Q (2733-2825) was not successful go to next best template
 -                                                              **
 - building model based on 1h04P (2733-2825) was not successful go to next best template
 -                                                              **
 - building model based on 1h2pP (2733-2825) was not successful go to next best template
 -                                                              **
 - building model based on 1uotP (2733-2825) was not successful go to next best template
 -                                                      **
 - building model based on 1h03P (2342-2434) was not successful go to next best template
 -                                                      **
 - building model based on 1h03Q (2342-2434) was not successful go to next best template
 -                                                      **
 - building model based on 1h04P (2342-2434) was not successful go to next best template
 -                                                      **
 - building model based on 1h2pP (2342-2434) was not successful go to next best template
 -                                                      **
 - building model based on 1uotP (2342-2434) was not successful go to next best template
 -                                                      **
 - building model based on 1h2qP (2342-2434) was not successful go to next best template
 -                                                     ***
 - building model based on 1gkgA (2322-2435) was successful 
 -                                                                           ***
 - building model based on 3erbA (3314-3465) was successful 
 -                                                       ***
 - building model based on 1ok3A (2400-2550) was successful 
 -                                                  ***
 - building model based on 1h04P (2202-2317) was not successful go to next best template
 -                                                  ***
 - building model based on 1h2qP (2202-2317) was not successful go to next best template
 -                                                  ***
 - building model based on 1h03P (2202-2317) was not successful go to next best template
 -                                                                *****
 - building model based on 1ok3A (2829-3053) was successful 
 -                                                              ***
 - building model based on 3hrzD (2733-2883) was not successful go to next best template
 -                                                              ***
 - building model based on 2ok5A (2733-2883) was not successful go to next best template
 -                                                              ***
 - building model based on 3hs0I (2733-2883) was not successful go to next best template
 -                                                              ***
 - building model based on 3hs0D (2733-2883) was not successful go to next best template
 -                                                              ***
 - building model based on 2xwbH (2733-2883) was not successful go to next best template
 -                                                              ***
 - building model based on 2xwbF (2733-2883) was not successful go to next best template
 -                                                              ***
 - building model based on 2xwjI (2733-2883) was not successful go to next best template
 -                                                              ***
 - building model based on 2xwjL (2733-2883) was not successful go to next best template
 -                                                              ***
 - building model based on 2xwjJ (2733-2883) was not successful go to next best template
 -                                                              ***
 - building model based on 2xwjK (2733-2883) was not successful go to next best template
 -                                                  ***
 - building model based on 1h03Q (2202-2317) was not successful go to next best template
 -                                                  ***
 - building model based on 1h2pP (2202-2317) was not successful go to next best template
 -                                                  ***
 - building model based on 1uotP (2202-2317) was not successful go to next best template
 -                                                  ***
 - building model based on 1e5gA (2203-2314) was successful 
 -                                                                       **
 - building model based on 2a55A (3116-3218) was successful 
 -                                                             **
 - building model based on 2rlqA (2672-2767) was successful 
 -                                                               ****
 - building model based on 1ok3A (2753-2942) was successful 
 -                                         *****
 - building model based on 3o8eB (1801-2018) was successful 
 -                                                              ***
 - building model based on 1gkgA (2714-2826) was successful 
 -                                        *
 - building model based on 4g1eB (1752-1782) was successful 
 -                                                             ***
 - building model based on 3erbA (2675-2825) was not successful go to next best template
 -                                                             ***
 - building model based on 3hrzD (2675-2825) was not successful go to next best template
 -         ***
 - building model based on 3hrzD (374-494) was not successful go to next best template
 -         ***
 - building model based on 2ok5A (374-494) was not successful go to next best template
 -         ***
 - building model based on 3hs0I (374-494) was not successful go to next best template
 -         ***
 - building model based on 3hs0D (374-494) was not successful go to next best template
 -         ***
 - building model based on 2xwbH (374-494) was not successful go to next best template
 -         ***
 - building model based on 2xwbF (374-494) was not successful go to next best template
 -         ***
 - building model based on 2xwjI (374-494) was not successful go to next best template
 -         ***
 - building model based on 2xwjL (374-494) was not successful go to next best template
 -         ***
 - building model based on 2xwjJ (374-494) was not successful go to next best template
 -         ***
 - building model based on 2xwjK (374-494) was not successful go to next best template
 -         ***
 - building model based on 4b2sA (377-497) was not successful go to next best template
 -                                                                   ****
 - building model based on 3erbA (2965-3125) was successful 
 -                                                             ****
 - building model based on 1ok3A (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 1ok3B (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 1ojwA (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 1ojwB (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 1ojvA (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 1ojvB (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 1ok2A (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 1ok2B (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 1ojyC (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 1ojyA (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 1ok1A (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 1ojyD (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 1ojyB (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 1ok1B (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 3iypF (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 1ok9B (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 1ok9A (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 3j24B (2663-2825) was not successful go to next best template
 -                                                             ****
 - building model based on 3o8eB (2660-2828) was successful 
 -                                                                              ***
 - building model based on 2vj2A (3439-3559) was not successful go to next best template
 -                                                                              ***
 - building model based on 2vj2B (3439-3559) was not successful go to next best template
 -                                                                              ***
 - building model based on 3fcsB (3435-3558) was successful 
 -                                                        ***
 - building model based on 3hrzD (2463-2607) was successful 
 -                                                    *****
 - building model based on 1ok3A (2262-2493) was successful 
 -                                                      *****
 - building model based on 2xrdA (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 2xrbA (2380-2607) was not successful go to next best template
 -                                                                          ***
 - building model based on 1ok3A (3248-3395) was successful 
 -                                                  ***
 - building model based on 3erbA (2164-2310) was successful 
 -                                                  *****
 - building model based on 3o8eD (2203-2437) was successful 
 -                                                      *****
 - building model based on 1ok3A (2380-2607) was not successful go to next best template
 -                                                                            ***
 - building model based on 4e0sB (3353-3503) was successful 
 -          **
 - building model based on 3o8eB (411-496) was successful 
 -                                                                         *****
 - building model based on 2xrbA (3193-3400) was successful 
 -                                                *****
 - building model based on 1ok3A (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 1ok3B (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 1ojwA (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 1ojwB (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 1ojvA (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 1ojvB (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 1ok2A (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 1ok2B (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 1ojyC (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 1ojyA (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 1ok1A (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 1ojyD (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 1ojyB (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 1ok1B (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 1ok9B (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 1ok9A (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 3iypF (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 3j24B (2082-2317) was not successful go to next best template
 -                                                *****
 - building model based on 2wiiC (2083-2317) was not successful go to next best template
 -                                         ****
 - building model based on 2xrdA (1766-1957) was successful 
 -                                                     *****
 - building model based on 3o8eB (2322-2550) was not successful go to next best template
 -                                                     *****
 - building model based on 3o8eD (2322-2550) was not successful go to next best template
 -                                                      *****
 - building model based on 1ok3B (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 1ojwA (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 1ojwB (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 1ojvA (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 1ojvB (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 1ok2A (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 1ok2B (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 1ojyC (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 1ojyA (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 1ok1A (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 1ojyD (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 1ojyB (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 1ok1B (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 1ok9B (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 1ok9A (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 3iypF (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 3j24B (2380-2607) was not successful go to next best template
 -                                                      *****
 - building model based on 1qubA (2380-2615) was successful 
 -                                                 *****
 - building model based on 2xrdA (2156-2368) was successful 
 -                                                     *****
 - building model based on 2xrbA (2321-2552) was successful 
 -                                       ***
 - building model based on 1e5gA (1688-1842) was successful 
 -                                                                          *****
 - building model based on 1qubA (3237-3477) was successful 
 -                                                                     ***
 - building model based on 3o8eB (3022-3172) was not successful go to next best template
 -                                                                *****
 - building model based on 1qubA (2796-3008) was successful 
 -                                                          ****
 - building model based on 1gkgA (2551-2710) was successful 
 -                                      ******
 - building model based on 1qubA (1648-1907) was successful 
 -                                                                   *****
 - building model based on 1ok3A (2946-3165) was successful 
 -                                                             *****
 - building model based on 2xrbA (2670-2883) was successful 
 -                                                       *****
 - building model based on 3o8eB (2400-2610) was successful 
 -                                          *****
 - building model based on 3o8eB (1846-2078) was successful 
 -                                              *****
 - building model based on 2xrbA (2020-2255) was successful 
 -                                                                       ******
 - building model based on 1qubA (3109-3356) was successful 
 -                                                                  *****
 - building model based on 2xrbA (2887-3113) was not successful go to next best template
 -          ***
 - building model based on 1ok3A (407-552) was successful 
 -   ****
 - building model based on 1n3yA (84-256) was successful 
 -        ****
 - building model based on 3erbA (334-502) was not successful go to next best template
 -                                                *****
 - building model based on 3o8eD (2082-2318) was successful 
 -                                                                     *****
 - building model based on 3o8eD (3022-3226) was successful 
 -                                                               *****
 - building model based on 2wiiC (2767-2999) was not successful go to next best template
 -                                       ******
 - building model based on 2wiiC (1691-1958) was successful 
 -                                                    *****
 - building model based on 1qubA (2279-2523) was successful 
 -        *****
 - building model based on 3t5oA (306-507) was not successful go to next best template
 -                                                                  *****
 - building model based on 3o8eD (2904-3113) was successful 
 -                                             *****
 - building model based on 3o8eB (1962-2198) was not successful go to next best template
 -                                             *****
 - building model based on 3o8eD (1962-2198) was not successful go to next best template
 -                                            *****
 - building model based on 1qubA (1927-2135) was successful 
 -                                     ***
 - building model based on 3hrzD (1621-1744) was successful 
 -                                                        ******
 - building model based on 3o8eD (2463-2712) was successful 
 -                            ****
 - building model based on 3fcsB (1196-1380) was not successful go to next best template
 -                            ****
 - building model based on 4g1eB (1201-1380) was not successful go to next best template
 -                            ***
 - building model based on 4g1eB (1198-1349) was not successful go to next best template
 -                            ***
 - building model based on 3fcsB (1199-1341) was successful 
 -                                                                     ******
 - building model based on 3o8eB (3022-3290) was not successful go to next best template
 -                            *****
 - building model based on 4g1eB (1196-1418) was not successful go to next best template
 -                              ***
 - building model based on 3fcsD (1272-1419) was successful 
 -                                                         ******
 - building model based on 2xrdA (2512-2760) was successful 
 -                             ****
 - building model based on 4g1eB (1234-1418) was not successful go to next best template
 -                             ****
 - building model based on 3fcsB (1235-1418) was not successful go to next best template
 -                                                                              **
 - building model based on 3fcsB (3435-3542) was not successful go to next best template
 -                                                                              **
 - building model based on 3ijeB (3435-3543) was successful 
 -       ****
 - building model based on 3fcsD (277-469) was successful 
 -   *****
 - building model based on 1jv2B (77-317) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:4e72911f5485d83bba95d099e899b17c on BC2-cluster at Fri Feb 22 14:55:52
2013


Template Description
Match Chain SeqId

3ije: CRYSTAL STRUCTURE OF THE COMPLETE INTEGRIN ALHAVBETA3 ECTODOMAIN PLUS AN ALPHA/BETA TRANSMEMBRANE FRAGMENT
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1200-1341 3ijeB 23%
[Model]
1196-1303 3ijeB 25%
[Model]
1216-1379 3ijeB 25%
[Model]
1277-1415 3ijeB 22%
[Model]
1315-1418 3ijeB 23%
[Model]
1353-1417 3ijeB 22%
[Model]
76-261 3ijeB 9%
[Model]
1331-1342 3ijeB 58%
[Model]
3484-3494 3ijeB 36%
[Model]
3435-3543 3ijeB 21%
[Model]
1391-1414 3ijeB 21%
[Model]
1369-1379 3ijeB 36%
[Model]
1407-1417 3ijeB 45%
[Model]

4b2s: SOLUTION STRUCTURE OF CCP MODULES 11-12 OF COMPLEMENT FACT
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1805-1886 4b2sA 27%
[Model]
2162-2244 4b2sA 24%
[Model]
431-562 4b2sA 17%
[Model]
377-497 4b2sA 21%
[Model]
2516-2537 4b2sA 27%
[Model]
1981-2002 4b2sA 36%
[Model]

1l5g: CRYSTAL STRUCTURE OF THE EXTRACELLULAR SEGMENT OF INTEGRINAVB3 IN COMPLEX WITH AN ARG-GLY-ASP LIGAND
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1201-1303 1l5gB 25%
[Model]
1201-1247 1l5gB 27%
[Model]
1216-1322 1l5gB 23%
[Model]
1251-1304 1l5gB 16%
[Model]
1292-1418 1l5gB 19%
[Model]
1328-1419 1l5gB 24%
[Model]
1329-1360 1l5gB 36%
[Model]
1366-1418 1l5gB 19%
[Model]
3435-3528 1l5gB 22%
[Model]
3468-3496 1l5gB 14%
[Model]
3470-3562 1l5gB 23%
[Model]
77-317 1l5gB 9%
[Model]

1jv2: CRYSTAL STRUCTURE OF THE EXTRACELLULAR SEGMENT OF INTEGRINALPHAVBETA3
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1201-1303 1jv2B 25%
[Model]
1201-1247 1jv2B 27%
[Model]
1216-1322 1jv2B 23%
[Model]
1251-1304 1jv2B 16%
[Model]
1292-1418 1jv2B 19%
[Model]
1328-1419 1jv2B 24%
[Model]
1329-1360 1jv2B 36%
[Model]
1366-1418 1jv2B 19%
[Model]
3435-3528 1jv2B 22%
[Model]
3468-3496 1jv2B 14%
[Model]
3470-3562 1jv2B 23%
[Model]
77-317 1jv2B 9%
[Model]

1m1x: CRYSTAL STRUCTURE OF THE EXTRACELLULAR SEGMENT OF INTEGRINALPHA VBETA3 BOUND TO MN2+
Solved by: X-RAY, Resolution: 3.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1201-1303 1m1xB 25%
[Model]
1201-1247 1m1xB 27%
[Model]
1216-1322 1m1xB 23%
[Model]
1251-1304 1m1xB 16%
[Model]
1292-1418 1m1xB 19%
[Model]
1328-1419 1m1xB 24%
[Model]
1329-1360 1m1xB 36%
[Model]
1366-1418 1m1xB 19%
[Model]
3435-3528 1m1xB 22%
[Model]
3468-3496 1m1xB 14%
[Model]
3470-3562 1m1xB 23%
[Model]
77-317 1m1xB 9%
[Model]

4hqf: CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM TRAP, I4 FORM
Solved by: X-RAY, Resolution: 2.25A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

81-263 4hqfA 20%
[Model]

4hqk: CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM TRAP, P4212 FOR
Solved by: X-RAY, Resolution: 2.25A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

81-263 4hqkA 20%
[Model]
81-261 4hqkB 20%
[Model]

1v7p: STRUCTURE OF EMS16-ALPHA2-I DOMAIN COMPLEX
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

83-262 1v7pC 19%
[Model]

4hqo: CRYSTAL STRUCTURE OF PLASMODIUM VIVAX TRAP PROTEIN
Solved by: X-RAY, Resolution: 2.19A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

80-265 4hqoA 19%
[Model]
81-265 4hqoB 19%
[Model]

4hql: CRYSTAL STRUCTURE OF MAGNESIUM-LOADED PLASMODIUM VIVAX TRA
Solved by: X-RAY, Resolution: 2.24A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

81-265 4hqlA 21%
[Model]
81-265 4hqlB 19%
[Model]

4hqn: CRYSTAL STRUCTURE OF MANGANESE-LOADED PLASMODIUM VIVAX TRA
Solved by: X-RAY, Resolution: 2.24A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

81-265 4hqnA 21%
[Model]
81-265 4hqnB 19%
[Model]

1aox: I DOMAIN FROM INTEGRIN ALPHA2-BETA1
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

81-263 1aoxA 19%
[Model]
81-263 1aoxB 19%
[Model]

1dzi: INTEGRIN ALPHA2 I DOMAIN / COLLAGEN COMPLEX
Solved by: X-RAY, Resolution: 2.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

82-257 1dziA 19%
[Model]

1n1i: THE STRUCTURE OF MSP-1(19) FROM PLASMODIUM KNOWLESI
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1193-1262 1n1iA 15%
[Model]
1233-1261 1n1iA 20%
[Model]
1272-1299 1n1iA 21%
[Model]
1307-1376 1n1iA 19%
[Model]
1345-1415 1n1iA 19%
[Model]
1382-1415 1n1iA 17%
[Model]
1754-1782 1n1iA 21%
[Model]
1751-1787 1n1iA 18%
[Model]
289-317 1n1iA 24%
[Model]
3411-3493 1n1iA 14%
[Model]
3470-3525 1n1iA 14%
[Model]
3498-3557 1n1iA 14%
[Model]
1193-1262 1n1iB 15%
[Model]
1270-1339 1n1iB 20%
[Model]
1309-1337 1n1iB 27%
[Model]
1345-1414 1n1iB 19%
[Model]
1382-1415 1n1iB 17%
[Model]
1754-1781 1n1iB 19%
[Model]
1752-1787 1n1iB 19%
[Model]
289-318 1n1iB 23%
[Model]
3412-3493 1n1iB 15%
[Model]
3470-3525 1n1iB 14%
[Model]
3498-3557 1n1iB 13%
[Model]
1194-1262 1n1iC 15%
[Model]
1232-1295 1n1iC 18%
[Model]
1270-1300 1n1iC 16%
[Model]
1310-1337 1n1iC 28%
[Model]
1346-1414 1n1iC 19%
[Model]
1383-1415 1n1iC 18%
[Model]
1727-1783 1n1iC 13%
[Model]
1752-1787 1n1iC 19%
[Model]
289-318 1n1iC 23%
[Model]
3470-3524 1n1iC 14%
[Model]
3501-3555 1n1iC 15%
[Model]
1194-1262 1n1iD 15%
[Model]
1232-1295 1n1iD 18%
[Model]
1307-1377 1n1iD 19%
[Model]
1345-1415 1n1iD 19%
[Model]
1382-1415 1n1iD 17%
[Model]
1741-1782 1n1iD 17%
[Model]
1752-1787 1n1iD 19%
[Model]
3412-3493 1n1iD 15%
[Model]
3470-3525 1n1iD 14%
[Model]
3499-3557 1n1iD 14%
[Model]
1252-1260 1n1iB 33%
[Model]
1289-1299 1n1iD 18%
[Model]
302-317 1n1iD 31%
[Model]
3434-3446 1n1iC 23%
[Model]
3378-3385 1n1iB 38%
[Model]
3377-3387 1n1iA 27%
[Model]

4g1e: CRYSTAL STRUCTURE OF INTEGRIN ALPHA V BETA 3 WITH COIL-COI
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1201-1310 4g1eB 23%
[Model]
1272-1419 4g1eB 23%
[Model]
1311-1417 4g1eB 24%
[Model]
1348-1418 4g1eB 23%
[Model]
1388-1418 4g1eB 26%
[Model]
3435-3528 4g1eB 17%
[Model]
3435-3561 4g1eB 19%
[Model]
3469-3560 4g1eB 22%
[Model]
65-260 4g1eB 9%
[Model]
1196-1418 4g1eB 23%
[Model]
1234-1418 4g1eB 22%
[Model]
1198-1349 4g1eB 25%
[Model]
1201-1380 4g1eB 21%
[Model]
1752-1782 4g1eB 32%
[Model]

4g1m: RE-REFINEMENT OF ALPHA V BETA 3 STRUCTURE
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1200-1267 4g1mB 24%
[Model]
1200-1228 4g1mB 31%
[Model]
1215-1379 4g1mB 22%
[Model]
1291-1398 4g1mB 24%
[Model]
1329-1418 4g1mB 24%
[Model]
1352-1418 4g1mB 22%
[Model]
80-260 4g1mB 9%
[Model]
1291-1303 4g1mB 31%
[Model]
1297-1303 4g1mB 43%
[Model]
1390-1413 4g1mB 17%
[Model]

3fcs: STRUCTURE OF COMPLETE ECTODOMAIN OF INTEGRIN AIIBB3
Solved by: X-RAY, Resolution: 2.55A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1201-1228 3fcsB 34%
[Model]
1198-1303 3fcsB 26%
[Model]
1272-1418 3fcsB 18%
[Model]
1291-1415 3fcsB 22%
[Model]
1312-1342 3fcsB 35%
[Model]
1348-1414 3fcsB 25%
[Model]
1389-1418 3fcsB 27%
[Model]
78-261 3fcsB 9%
[Model]
1198-1267 3fcsD 29%
[Model]
1200-1304 3fcsD 25%
[Model]
1234-1342 3fcsD 23%
[Model]
1277-1304 3fcsD 25%
[Model]
1309-1418 3fcsD 25%
[Model]
1347-1415 3fcsD 23%
[Model]
1352-1380 3fcsD 27%
[Model]
152-198 3fcsD 13%
[Model]
3435-3505 3fcsD 22%
[Model]
3471-3561 3fcsD 26%
[Model]
3470-3529 3fcsD 25%
[Model]
1217-1228 3fcsD 50%
[Model]
1272-1419 3fcsD 23%
[Model]
1196-1380 3fcsB 25%
[Model]
1199-1341 3fcsB 22%
[Model]
1235-1418 3fcsB 19%
[Model]
3435-3542 3fcsB 21%
[Model]
3435-3558 3fcsB 20%
[Model]
277-469 3fcsD 16%
[Model]

1u8c: A NOVEL ADAPTATION OF THE INTEGRIN PSI DOMAIN REVEALED FROITS CRYSTAL STRUCTURE
Solved by: X-RAY, Resolution: 3.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1201-1265 1u8cB 21%
[Model]
1214-1284 1u8cB 30%
[Model]
1253-1341 1u8cB 22%
[Model]
1291-1379 1u8cB 25%
[Model]
1328-1420 1u8cB 22%
[Model]
1352-1419 1u8cB 27%
[Model]
3469-3496 1u8cB 11%
[Model]
3469-3563 1u8cB 23%
[Model]
3471-3528 1u8cB 28%
[Model]
76-263 1u8cB 9%
[Model]
1405-1418 1u8cB 29%
[Model]
1254-1266 1u8cB 15%
[Model]

3t3m: A NOVEL HIGH AFFINITY INTEGRIN ALPHAIIBBETA3 RECEPTOR ANTAUNEXPECTEDLY DISPLACES MG2+ FROM THE BETA3 MIDAS
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

77-261 3t3mB 9%
[Model]
77-261 3t3mD 9%
[Model]

3nid: THE CLOSED HEADPIECE OF INTEGRIN ALPHAIIB BETA3 AND ITS COAN ALPAHIIB BETA3 -SPECIFIC ANTAGONIST THAT DOES NOT INDU
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

77-261 3nidB 9%
[Model]
77-261 3nidD 9%
[Model]

2npr: STRUCTURAL STUDIES ON PLASMODIUM VIVAX MEROZOITE SURFACE PROTEIN-1
Solved by: NMR, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1196-1262 2nprA 15%
[Model]
1234-1299 2nprA 16%
[Model]
1270-1338 2nprA 17%
[Model]
1308-1377 2nprA 20%
[Model]
1348-1414 2nprA 22%
[Model]
1385-1414 2nprA 16%
[Model]
1745-1782 2nprA 23%
[Model]
1751-1819 2nprA 15%
[Model]
289-317 2nprA 21%
[Model]
3470-3527 2nprA 11%
[Model]
3500-3556 2nprA 12%
[Model]
3528-3557 2nprA 9%
[Model]
3472-3492 2nprA 16%
[Model]

2vdl: RE-REFINEMENT OF INTEGRIN ALPHAIIBBETA3 HEADPIECE
Solved by: X-RAY, Resolution: 2.9A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

76-261 2vdlB 9%
[Model]

2vdr: INTEGRIN ALPHAIIBBETA3 HEADPIECE BOUND TO A CHIMERIC FIBRINOGEN GAMMA CHAIN PEPTIDE, LGGAKQRGDV
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

77-261 2vdrB 9%
[Model]

3nig: THE CLOSED HEADPIECE OF INTEGRIN IIB 3 AND ITS COMPLEX WITSPECIFIC ANTAGONIST THAT DOES NOT INDUCE OPENING
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

77-261 3nigB 9%
[Model]
77-261 3nigD 9%
[Model]

2vc2: RE-REFINEMENT OF INTEGRIN ALPHAIIBBETA3 HEADPIECE BOUND TOANTAGONIST L-739758
Solved by: X-RAY, Resolution: 3.1A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

77-261 2vc2B 9%
[Model]

1tye: STRUCTURAL BASIS FOR ALLOSTERY IN INTEGRINS AND BINDING OFLIGAND-MIMETIC THERAPEUTICS TO THE PLATELET RECEPTOR FOR FIBRINOGEN
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

77-263 1tyeB 9%
[Model]
77-263 1tyeD 9%
[Model]
77-263 1tyeF 9%
[Model]

3fcu: STRUCTURE OF HEADPIECE OF INTEGRIN AIIBB3 IN OPEN CONFORMATION
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

77-261 3fcuB 9%
[Model]
77-261 3fcuD 9%
[Model]
77-261 3fcuF 9%
[Model]

2vdm: RE-REFINEMENT OF INTEGRIN ALPHAIIBBETA3 HEADPIECE BOUND TOANTAGONIST TIROFIBAN
Solved by: X-RAY, Resolution: 2.9A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

76-261 2vdmB 9%
[Model]

2vdq: INTEGRIN ALPHAIIBBETA3 HEADPIECE BOUND TO A CHIMERIC FIBRINOGEN GAMMA CHAIN PEPTIDE, HHLGGAKQRGDV
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

77-261 2vdqB 9%
[Model]

2vdk: RE-REFINEMENT OF INTEGRIN ALPHAIIBBETA3 HEADPIECE
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

77-261 2vdkB 9%
[Model]

3nif: THE CLOSED HEADPIECE OF INTEGRIN IIB 3 AND ITS COMPLEX WITSPECIFIC ANTAGONIST THAT DOES NOT INDUCE OPENING
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

77-261 3nifB 9%
[Model]
76-261 3nifD 9%
[Model]

2vdp: INTEGRIN ALPHAIIBBETA3 HEADPIECE BOUND TO FIBRINOGEN GAMMACHAIN PEPTIDE,LGGAKQAGDV
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

77-261 2vdpB 9%
[Model]

2vdo: INTEGRIN ALPHAIIBBETA3 HEADPIECE BOUND TO FIBRINOGEN GAMMACHAIN PEPTIDE, HHLGGAKQAGDV
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

77-261 2vdoB 9%
[Model]

3t3p: A NOVEL HIGH AFFINITY INTEGRIN ALPHAIIBBETA3 RECEPTOR ANTAUNEXPECTEDLY DISPLACES MG2+ FROM THE BETA3 MIDAS
Solved by: X-RAY, Resolution: 2.60A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

77-261 3t3pB 9%
[Model]
77-261 3t3pD 9%
[Model]

2vdn: RE-REFINEMENT OF INTEGRIN ALPHAIIBBETA3 HEADPIECE BOUND TOANTAGONIST EPTIFIBATIDE
Solved by: X-RAY, Resolution: 2.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

77-261 2vdnB 9%
[Model]

1b9w: C-TERMINAL MEROZOITE SURFACE PROTEIN 1 FROM PLASMODIUM CYNOMOLGI
Solved by: X-RAY, Resolution: 1.80A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1194-1259 1b9wA 15%
[Model]
1236-1261 1b9wA 15%
[Model]
1350-1409 1b9wA 19%
[Model]
1751-1822 1b9wA 14%
[Model]
289-317 1b9wA 17%
[Model]
3471-3523 1b9wA 13%
[Model]
3502-3552 1b9wA 13%
[Model]
1328-1337 1b9wA 20%
[Model]
3434-3446 1b9wA 8%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.