SWISS-MODEL Repository - Model Details

Model Overview
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1
186

Sequence
UniProt A2BNF2
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
EFP
EFP_N
Elong-fact-P_C

Model 3D Structure
Model information:
Modelled residue range: 1 to 184
Based on template: [ 1yby ]  
Sequence Identity [%]: 45%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1       MISSNDFR TGTTIELDGQ VWRVVEFLHV KPGKGSAFVR TKLKSVQSGN
1ybyA     2       xisagdfk ngvtfeldgq ifqviefqhv kpga--afvr tklknivtga
                                                                      
TARGET             sss       sssss  s ssssssssss        sss ssssss   s
1ybyA              sss       sssss  s ssssssssss        sss ssssss   s


TARGET    49    VVEKTFRAGE QVQQAILEKS NLQHTYVESG DYVFMDMTSF EETSLTSEQI
1ybyA     49    tiektfnptd kxpkahierk dxqylyndgd lyyfxdtetf eqlplgkdki
                                                                      
TARGET          ssssss   s sssss  sss ssssssss   ssssss     sssss  hhh
1ybyA           ssssss   s sssss  sss ssssssss   ssssss     sssss  hhh


TARGET    99    GKGAKYLKEG MEVNVIFHNG KVLEVELPIS ITLKVTETDP GVKGDTASGG
1ybyA     99    gdalkfvken eivkvlshkg nvfgieppnf velevtdt-- -----tatga
                                                                      
TARGET                     ssssssss   ssssss  ss ssssss               
1ybyA                      ssssssss   ssssss  ss ssssss               


TARGET    149   TKPAILETGA QVMVPLFISV GEMIRVDTRN DSYLGR               
1ybyA     149   tkpaivetga sikvplfvnk gdiiridtrt geyxerv              
                                                                      
TARGET           ssssss  s ssss        sssssss    sssss               
1ybyA            ssssss  s ssss        sssssss    ssssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 0eb8b12a18947bc3d50b3e2a1ba9edb5 on BC2-cluster at Sat Aug 30 02:20:54 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>0eb8b12a18947bc3d50b3e2a1ba9edb5
*********************************************************************************************
>1ybyA Evalue:0 SeqID:45.652 Method:HHSEARCH Type:MODEL
****************-***************************************************---*********************-


TEMPLATE ID    START          STOP           METHOD         STATUS         
1ybyA          1              184            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 0eb8b12a18947bc3d50b3e2a1ba9edb5 on gopt-44.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 02:24:22 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.