SWISS-MODEL Repository - Model Details

Model Overview
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1
302

Sequence
UniProt A2BQE5
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
HSP33

Model 3D Structure
Model information:
Modelled residue range: 1 to 300
Based on template: [ 1vq0 ]  
Sequence Identity [%]: 34%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1       MQDRIVRA TAANGGIRLV AVLTTESSLE AKKRHGLSYL TTCILGRAFS
1vq0A     65534    hhhmiyyg tmfdhkvrfs ivrmrevvee arnrhalsyl atvvlgrali
                                                                      
TARGET             sssssss sss  sssss ssssshhhhh hhhhh   hh hhhhhhhhhh
1vq0A               ssssss sss  sssss sssshhhhhh hhhhh   hh hhhhhhhhhh


TARGET    49    ASLLLASSMK IMHGRVTLRV RSDGPLKGLL VDAGRDGKVR GYVGNPNLEL
1vq0A     46    gaalvtpwla e-kerwtldi egngpirrvv aqstseftvr gyvanpkvel
                                                                      
TARGET          hhh           sssssss sss   ssss sssss ssss ssss      
1vq0A           hhh           sssssss sss   ssss sssss ssss ssss      


TARGET    99    DLVKIDNDKY SFDFTKALGT GYLNVIRDSG FGEPFTSTVE LVNGNIAEDL
1vq0A     95    pl----nekg kfdvagaigq gvlrvvrdlg lktpfvsqvp lvsgeiaedl
                                                                      
TARGET                        hhhhh s ssssssss       ssssss s     hhhh
1vq0A                         hhhhh s ssssssss       ssssss s     hhhh


TARGET    149   ASYLYHSEQT PSAVFIGEKI QNKSVICSGG LLAQVLPKKD TDPLLISLLE
1vq0A     141   ayyfavseqi psafsigvlv dsdgvkiagg favqiidrtl -eqekvemie
                                                                      
TARGET          hhhhhhh    ssssssssss s  sssssss ssssss        hhhhhhh
1vq0A           hhhhhhh    ssssssssss s  sssssss ssssss       hhhhhhhh


TARGET    199   ERCKEINSFS EDLFKSKHNL LELIRNIFPD IDDKSISEKA RSQEVSFKCK
1vq0A     190   kniknlpsis klfqe-a-ep ldvlerifge --kvgfv--- etaeikykcd
                                                                      
TARGET          hhhh    hh hhh      h hhhhhhh     hhhhhhhh  ssssssss  
1vq0A           hhhh    hh hhh      h hhhhhhhh              ssssssss  


TARGET    249   CSKQRSLNAM KMLDKSELED ILKKDGKAEL VCEFCKNKYL INFEEIKSMI
1vq0A     233   cnrekaknal lvldkkeled mrk-egkgev vckwcntryv fseeeleell
                                                                      
TARGET            hhhhhhhh h    hhhhh hh     sss ss    ssss s hhhhhhhh
1vq0A             hhhhhhhh h    hhhhh hhh h  sss ss    ssss s hhhhhhhh


TARGET    299   EN ---                                                
1vq0A     282   kfkvdd                                                
                                                                      
TARGET          hh                                                    
1vq0A           hhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 32a64fc94ec36d4c2e6f7ae0cc6b0691 on BC2-cluster at Sat Aug 30 18:52:26 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>32a64fc94ec36d4c2e6f7ae0cc6b0691
****************************************************************************
>1vq0A Evalue:0 SeqID:34.000 Method:HHSEARCH Type:MODEL
*************************-*************************************************-


TEMPLATE ID    START          STOP           METHOD         STATUS         
1vq0A          1              300            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 32a64fc94ec36d4c2e6f7ae0cc6b0691 on gopt-41.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 18:56:11 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.