SWISS-MODEL Repository - Model Details

Model Overview
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1
333

Sequence
UniProt A2BQQ2
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
FBPase_glpX

Model 3D Structure
Model information:
Modelled residue range: 1 to 326
Based on template: [ 1ni9 ]  
Sequence Identity [%]: 38%
Model date: 2008-08-02
Revision date: 2008-08-02

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-02. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    1         MNQTLI QEILEVVEQA AIASAKLTGL GQKDEADAAA VEAMRLRMGK
1ni9A     65535  gh--mrrela iefsrvtesa alagykwlgr gdkntadgaa vnamrimlnq
                                                                      
TARGET                     hhhhhhhhhh hhhhhhhh    hhhhhhhhh hhhhhhhhh 
1ni9A                      hhhhhhhhhh hhhhhhhhh    hhhhhhhh hhhhhhhhh 


TARGET    47    IEMKGKIVIG EGERDEAPML YIGEEVGSGS GPGVDFAVDP CEGTNLCANN
1ni9A     47    vnidgtivig eg---eapml yigekvgtgr gdavdiavdp iegtq-----
                                                                      
TARGET             sssss                 sss      ssssssss        hh  
1ni9A              sssss                 sss      ssssssss            


TARGET    97    QRGSMAVLAA SDTGGLFNAP DFYMNKLAAP PAAKGKVDIR NSATENLKIL
1ni9A     98    -analavlav gdkgcflnap dmymeklivg pgakgtidln lpladnlrnv
                                                                      
TARGET             sssssss ss  sss     ssssssss               hhhhhhhh
1ni9A              sssssss ss  sss     ssssssss               hhhhhhhh


TARGET    147   SDCLGLSIDE LTVVVMDRTR HKDLIKEIRG CGAKVQPISD GDVQAAIACG
1ni9A     147   aaalgkplse ltvtil--ak hdaviaemqq lgvrvfaipd gdvaasiltc
                                                                      
TARGET          hhhh         sssss      hhhhhhhh h  sssss    hhhhhhhhh
1ni9A           hhhh         ssss  s   hhhhhhhhh h  sssss    hhhhhhhhh


TARGET    197   FAGIGTHCLM GIGAAPEGVI SAAAMRALGG HFQGQLVYDP AIAQTSEWAD
1ni9A     197   mpdsevdvly giggapegvv saaviraldg dmngrllag- ----------
                                                                      
TARGET                  ss ssssshhhhh hhhhhhhh   sssssss     sssss  ss
1ni9A                   ss ssssshhhhh hhhhhhhh   sssssss              


TARGET    247   YTKEGNIKRL NEMGITDIDK IYEANELASG ENVVFAGSGI TDGLLFDGVK
1ni9A     261   ---------- -----ieagk vlrlgdmars dnvifsatgi tkgdllegis
                                                                      
TARGET          s  sss sss ss          ssshhsss   sssssssss          s
1ni9A                                  ssshhsss   sssssssss          s


TARGET    297   FERDCVRTSS LVISTLDSTA RFTNTVHIKD                      
1ni9A     296   rkgniattet llirgksrti rriqsihyld -                    
                                                                      
TARGET          ss sssssss sssss  sss sssssssss                       
1ni9A           ss sssssss sssss   ss sssssssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: b8fccd754be6270c12870ef33d7df31e on BC2-cluster at Sat Aug  2 15:31:42 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>b8fccd754be6270c12870ef33d7df31e
************************************************************************************
>1ni9A Evalue:0 SeqID:38.037 Method:HHSEARCH Type:MODEL
***********************-***********************************------*****************--


TEMPLATE ID    START          STOP           METHOD         STATUS         
1ni9A          1              326            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: b8fccd754be6270c12870ef33d7df31e on gopt-68.cluster.bc2.ch BC2-Cluster at
Sat Aug  2 15:34:37 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.