SWISS-MODEL Repository - Model Details

Model Overview
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1
344

Sequence
UniProt A2BW42
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Hexapep
Hexapep
Hexapep
Hexapep
LpxD

Model 3D Structure
Model information:
Modelled residue range: 24 to 344
Based on template: [ 2iu8 ]  
Sequence Identity [%]: 27%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    24                              ENIDIQ NAASLDVASK NQISFLEENN
2iu8A     1     msqstysleq ladflkvefq gn--gatlls gveeieeakt ahitfldnek
                                                                      
TARGET                                                       sssss    
2iu8A                ssshh hhhhh  sss       sss              sssss    


TARGET    50    ILKENLGRTA VSAIITFNNS EILGLL-ESK NISNIVVENP RIAFAEVLNY
2iu8A     49    -yakhlksse agaiiisrt- -qfqkyrdln knflitsesp slvfqkclel
                                                                      
TARGET              hhhh     ssssss               sssss   h hhhhhhh   
2iu8A             hhhhh      ssssssh   hhh        sssss   h hhhhhhhhh 


TARGET    99    LYEQIN-FNP GIDDSVVMKE SSKLGENCYL GPNVYIGENT VIGNNNKIFP
2iu8A     96    fitpvdsgfp gihptavihp taiiedhvci epyavvcqha hvgsachigs
                                                                      
TARGET          h                sss    sss   ss s  ssss  s sss  ssss 
2iu8A                            sss    sss   ss s  ssss  s sss  ssss 


TARGET    148   GTTILGNVRL GDNNIIHPNC VIYENTRIEN NCVINSNTVI GSEGFGFIPQ
2iu8A     146   gsvigaystv gehsyihprv virervsigk rviiqpgavi gscgfgyvts
                                                                      
TARGET           ssss  sss s  ssss  s sss  ssss   ssss  sss s      sss
2iu8A            ssss  sss s  ssss  s sss  ssss   ssss  sss s      sss


TARGET    198   -DGKWIKMPQ KGSVIIKSFV EIGTNCCVDR PSVGNTLIDE GTKIDNLVQI
2iu8A     196   afgqhkhlkh lgkviieddv eiganttidr grfkhsvvre gskidnlvqi
                                                                      
TARGET             sss       sssss  s sss  ssss       ssss   ssss  sss
2iu8A              sss       sssss  s sss  ssss       ssss   ssss  sss


TARGET    247   GHGVKIGKNC ALAAQVGIAG GAVIGDGVIL AGQVGVNNRV KVGNNVIASS
2iu8A     246   ahqvevgqhs mivaqagiag stkignhvii ggqagitghi ciadhvimma
                                                                      
TARGET          s  ssss  s sss  ssss   ssss  sss s  ssss  s ss  sssss 
2iu8A              ssss  s sss   sss   ssss  sss s  ssss  s ss  sssss 


TARGET    297   KCGIHCDIED GEVVSGFPAM KNKSWLRSSS IFKKLPELAK KLRQLDKK -
2iu8A     296   qtgvtksits pgiyggapar pyqeihrqva kvrnlprlee riaaleklvq
                                                                      
TARGET           sss        sss         hhhhhhhh hh   hhhhh hhhhhh    
2iu8A            sss        sss         hhhhhhhh hh   hhhhh hhh       


TARGET          -                                                     
2iu8A     346   k                                                     
                                                                      
TARGET                                                                
2iu8A

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: ae172b6e9e74a12a8e8863a9d422238d on BC2-cluster at Sat Aug 30 19:16:13 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>ae172b6e9e74a12a8e8863a9d422238d
**************************************************************************************
>2iu8A Evalue:0 SeqID:27.469 Method:HHSEARCH Type:MODEL
------********************************************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
2iu8A          24             344            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: ae172b6e9e74a12a8e8863a9d422238d on gopt-75.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 19:19:08 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.