SWISS-MODEL Repository - Model Details

Model Overview
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1
544

Sequence
UniProt A2ZF53
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
GatB_Yqey
GatB_N

Model 3D Structure
Model information:
Modelled residue range: 63 to 467
Based on template: [ 2df4 ]  
Sequence Identity [%]: 48%
Model date: 2008-07-06
Revision date: 2008-07-06

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-07-06. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    63      SFEAVIGI ETHVQLSTVT KAFCSCPYSY GSQPNSTVCP TCMGHPGTLP
2df4B     2       hfetvigl evhvelktds kmfspspahf gaepnsntnv idlaypgvlp
                                                                      
TARGET            ssssssss ssssss  ss s    sss            h hhh       
2df4B             ssssssss ssssss  ss s    sss            h hhh       


TARGET    111   VLNAKVVECA VKLGLALNCE IATTSKFDRK QYFYPDLPKG YQISQFDIPI
2df4B     50    vvnkravdwa mraamalnme iateskfdrk nyfypdnpka yqisqfdqpi
                                                                      
TARGET             hhhhhhh hhhhhh   s sssss ssss ss       s ssss     s
2df4B               hhhhh    hhhh   s sssss ssss ss       s ssss     s


TARGET    161   AKEGYLDLDL PVEFGGGHRR FGVTRVHMEE DAGKLLHSES GSYSQVDLNR
2df4B     100   gengyidie- ---vdgetkr igitrlhmee dagksthk-- geyslvdlnr
                                                                      
TARGET          ssssssss           ss ssssssssss s  sss         sss   
2df4B           ssssssss           ss ssssssssss s  sssss     sssss   


TARGET    211   AGVPLLEIVS EPDMRTGIEA AEYGAELQRL VRYLGVSNGN MQEGSLRCDV
2df4B     144   qgtplieivs epdirspkea yayleklrsi iqytgvsdvk meegslrcda
                                                                      
TARGET            ssssssss s     hhhh hhhhhhhhhh hhh              ssss
2df4B             ssssssss s     hhhh hhhhhhhhhh hhh            ssssss


TARGET    261   NVSVRPIGQS NFGTKVEIKN MNSFSAISRA IDYEISRQIL LHKEGQADQI
2df4B     194   nislrpygqe kfgtkaelkn lnsfnyvrkg leyeekrqee ellngg--ei
                                                                      
TARGET          sssssss        sssss     hhhhhhh hhhhhh   h hhhh      
2df4B           sssssss        sssss     hhhhhhh hhhhhh   h hhhh      


TARGET    311   VQETRLWDES SQKTFTMRKK EGLADYRYFP EPDLPEVVLT SEYIDEIQNS
2df4B     242   gqetrrfdes tgktilmrvk egsddyryfp epdivplyid dawkervrqt
                                                                      
TARGET          ssssssss     ssssssss         ss s     sss  hhhhhhhh  
2df4B           ssssssss     ssssssss         ss s     sss  hhhhhhhh  


TARGET    361   MPELPEAKRR RFENM-GLSM QDVLFLANDD NVARFFDSTL EHGADAKLAA
2df4B     292   ipelpderka kyvnelglpa ydahvltltk emsdffesti ehgadvklts
                                                                      
TARGET              hhhhhh    h       hhhhh    h hhhhhhhhhh h    hhhhh
2df4B               hhhhh    h        hhhhh   hh hhhhhhhhhh h     hhhh


TARGET    410   NWIMGDIAAY LKNEKLSIDE IKLTPLELSE LIASIKNGTI SGKIGKEILI
2df4B     342   nwlmggvney lnknqvelld tkltpenlag mikliedgtm sskiakkvfp
                                                                      
TARGET          hhh   hhhh hhh            hhhhhh hhhhhh        hhhhhhh
2df4B           hhh   hhhh hhh            hhhhhh hhhhhh        hhhhhhh


TARGET    460   ELIAKGGT                                              
2df4B     392   elaakggna                                             
                                                                      
TARGET          hhhh                                                  
2df4B           hhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: dd19d9be92a0f2e383215ced82cfcba8 on BC2-cluster at Sun Jul  6 20:17:41 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>dd19d9be92a0f2e383215ced82cfcba8
******************************************************************************
>2df4B Evalue:0 SeqID:48.276 Method:HHSEARCH Type:MODEL
---------***************-******************************************-----------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2df4B          63             467            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: dd19d9be92a0f2e383215ced82cfcba8 on gopt-67.cluster.bc2.ch BC2-Cluster at
Sun Jul  6 20:21:56 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.