SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
254

Sequence
UniProt A4EP81
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Asp_Glu_race

Model 3D Structure
Model information:
Modelled residue range: 22 to 248
Based on template: [ 2dgd ]  
Sequence Identity [%]: 20%
Model date: 2008-08-06
Revision date: 2008-08-06

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-06. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    22       PKRIALV TLATDHTSER DFARICDPDR IGVYVNRIAF ENPTTKETLL
2dgdA     2     pggrgrigvi lpannagxey dlwkxa-peg vsihstrxkp tkgcepenve
                                                                      
TARGET              ssssss sss    hhh hhhhh       sssssss           hh
2dgdA               ssssss sss    hhh hhhhh    s ssssssss           hh


TARGET    69    KTGPRLSEAA AQILPGEEVD VVAYGCTAAS IVLGNDAVTR HLNAAKPDTP
2dgdA     51    efekelkysy -s-llaevsd iiiygrtygt hkhah--vi- ----krvikd
                                                                      
TARGET          hhhhhhhhh       hhh   sssss          sss    sss       
2dgdA           hhhhhhhhhh  h         sssss          h  hh      hhh   


TARGET    119   CVTPSSAAFA AFAALGAKRV SLLTPYSAEV TEEMAQYFAA HGPEVVNATC
2dgdA     92    vvipeesvye llkklnvrkl wigtpyiker tleevewwrn kgfeivgydg
                                                                      
TARGET             hhhhhhh hhhhh  sss ssss    hh hhhhhhhhhh    sssssss
2dgdA              hhhhhhh hhhhh  sss ssss    hh hhhhhhhhhh    sssssss


TARGET    169   FGLTDDREMA RISEDSIIEA AIAACSG--Q ADALFLSCTA LRAATCVQQI
2dgdA     142   lgkirgidis ntpiftiyrl vkrhlnevlk adavyiacta lstyeavqyl
                                                                      
TARGET          s    hhhhh    hhhhhhh hh           sssss       hhhhhhh
2dgdA           s    hhhhh    hhhhhhh hh   hhhh    sssss       hhhhhhh


TARGET    217   EDRLGKPVVT SNQAMAWHCQ RLAGITDPVQ GY                   
2dgdA     192   hedldxpvvs enaaaxweal nklkikaklp gf-                  
                                                                      
TARGET          hhhh  ssss shhhhhhhhh hhh                             
2dgdA           hhhh  ssss shhhhhhhhh hhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: b4668dbeec0aca4a2bc568f954486148 on BC2-cluster at Wed Aug  6 19:56:25 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>b4668dbeec0aca4a2bc568f954486148
*************************************************************************************
>2dgdA Evalue:0 SeqID:20.961 Method:HHSEARCH Type:MODEL
-------*******************-*******-*-**********************************************--


TEMPLATE ID    START          STOP           METHOD         STATUS         
2dgdA          22             248            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: b4668dbeec0aca4a2bc568f954486148 on cpt118 BC2-Cluster at Wed Aug  6
19:59:30 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.