SWISS-MODEL Repository - Model Details

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1
436

Sequence
UniProt A4IIJ8
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
A4IIJ8: 8364.ENSXETP0000

Domain
Link to: [ InterPro ]
HMG_box
Sox_N

Model 3D Structure
Model information:
Modelled residue range: 90 to 164
Based on template: [ 1o4x ]  
Sequence Identity [%]: 64%
Model date: 2008-08-21
Revision date: 2008-08-21

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-21. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    90        VKRPMN AFMVWAQAAR RKLADQYPHL HNAELSKTLG KLWRLLNEND
1o4xB     206   dr--vkrpmn afmvwsrgqr rkmaqenpkm hnseiskrlg aewkllsete
                                                                      
TARGET                     hhhhhhhhhh hhhhhh      hhhhhhhhh hhhh   hhh
1o4xB                      hhhhhhhhhh hhhhhh      hhhhhhhhh hhhh   hhh


TARGET    136   KRPFIEEAER LRMQHKKDHP DYKYQPRRR                       
1o4xB     254   krpfideakr lralhmkehp dykyrprrk-                      
                                                                      
TARGET          hhhhhhhhhh hhhhhhhh                                   
1o4xB           hhhhhhhhhh hhhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 2b0ade85574a3bd47b8258b73f363c71 on BC2-cluster at Thu Aug 21 15:27:36 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>2b0ade85574a3bd47b8258b73f363c71
****************************************************************************************
>1o4xB Evalue:8.28554e-23 SeqID:64.000 Method:BLAST Type:MODEL
------------------***************-------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1o4xB          90             164            BLAST          BUILT          

FINISHED PIPELINE ON ID: 2b0ade85574a3bd47b8258b73f363c71 on gopt-80.cluster.bc2.ch BC2-Cluster at
Thu Aug 21 15:30:39 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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