SWISS-MODEL Repository - Model Details

Model Overview
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1
283

Sequence
UniProt A4RGT4
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Peptidase_M43

Model 3D Structure
Model information:
Modelled residue range: 61 to 282
Based on template: [ 2cki ]  
Sequence Identity [%]: 29%
Model date: 2008-07-16
Revision date: 2008-07-16

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-07-16. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    61      RQSALTID TYVHVVATST SASAGYLSDA TIQQQLRVMN EDYA------
2ckiA     61      rxeivkip vvvhvvwne- --eeenisda qiqsqidiln kdfrklnsdv
                                                                      
TARGET                ssss s                  hh hhhhhhhhhh hh        
2ckiA                 ssss sssssss            hh hhhhhhhhhh hh      hh


TARGET    103   ---------- --PSGIQFVL KGTDRTVNAN WARD------ ---SGETAMK
2ckiA     106   sqvpsvwsnl iadlgieffl atkdpngnqt tgitrtqtsv tffttsdevk
                                                                      
TARGET                         ssssss ssss   sss                      
2ckiA           h       hs ss  ssssss ssss   sss  sssssss     sss     


TARGET    132   TALRKGTYKD L-----NLYF LSSIP----G GILGYCYFPA SATTSTVRLD
2ckiA     156   fassggedaw padrylniwv chvlkseigq dilgyaqfpg g----paetd
                                                                      
TARGET                           hhhh              sssss              
2ckiA                           sssss s ssss   s sssssss              


TARGET    173   GCTIASGTV- -PGGSISRFN LGKTAVHEVG HWFGLYHTFQ GGCNG-----
2ckiA     202   gvvivdaafg ttgtalppfd kgrtatheig hwlnlyhiwg delrfedpcs
                                                                      
TARGET          sssss                    hhhhhhh hh                   
2ckiA           ssssss                   hhhhhhh hh                   


TARGET    216   QGDLVDDTPA QASASSGCPI -GRDSCPNQP GLDPIHNYMD YSDDSCYEEF
2ckiA     252   rsdevddtpn qadpnfgaps yphvscsngp ngdxfxnyxd yvddkcxvxf
                                                                      
TARGET                         sss                          sss       
2ckiA                          sss                          sss      s


TARGET    265   TPGQNARMSS MFAQFRAG - -                               
2ckiA     302   tqgqatrvna cldgprssfl a                               
                                                                      
TARGET           hhhhhhhhh hhh                                        
2ckiA           sshhhhhhhh hhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 2ca2702d447d2c68b070f6542100841c on BC2-cluster at Wed Jul 16 00:23:27 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>2ca2702d447d2c68b070f6542100841c
***********************************************************************
>2ckiA Evalue:0 SeqID:29.323 Method:HHSEARCH Type:MODEL
---------------****-*********************-*****************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
2ckiA          61             282            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 2ca2702d447d2c68b070f6542100841c on gopt-4.cluster.bc2.ch BC2-Cluster at
Wed Jul 16 00:26:50 2008


Template Description
Match Chain SeqId

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Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
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