SWISS-MODEL Repository - Model Details

Model Overview
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1
270

Sequence
UniProt A4UYK8
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
IL1
IL1_propep

Model 3D Structure
Model information:
Modelled residue range: 119 to 270
Based on template: [ 2nvh ]  
Sequence Identity [%]: 69%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    119     APPRSLDC KFQDINQKSL VLYNSYELRA LHLNGTSVNQ QAVFRMTFVQ
2nvhA     1       apvrslnc tlrdsqqksl vmsgpyelka lhlqgqdmeq qvvfsmsfvq
                                                                      
TARGET               sssss sssss   ss sss   ssss s     hhh    sssssss 
2nvhA                sssss sssss   ss sss   ssss s     hhh    sssssss 


TARGET    167   EDEDITKIPV ALCIKEKNLY LSCVMKDGKP TLQLEMLDPK VYPKKRMEKR
2nvhA     49    geesndkipv alglkeknly lscvlkddkp tlqlesvdpk nypkkkmekr
                                                                      
TARGET               sssss sssss  sss ssssss  ss sssssss              
2nvhA                sssss sssss  sss ssssss  ss sssssss              


TARGET    217   FVFNKTEIKK KVEFESSQFP NWYISTSQAE AMPVFLGNNR GGHDITDFTM
2nvhA     99    fvfnkieinn klefesaqfp nwyistsqae nmpvflggtk ggqditdftm
                                                                      
TARGET           sssssss   sssssss     ssss       ssssss          ssss
2nvhA            sssssss   sssssss     ssss       ssssss          ssss


TARGET    267   ELSS                                                  
2nvhA     149   qfvs-                                                 
                                                                      
TARGET          sss                                                   
2nvhA           sss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 6334ed7112a7263777564d50acf96cac on BC2-cluster at Sat Aug 30 21:14:38 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>6334ed7112a7263777564d50acf96cac
******************************************************************************************
>2nvhA Evalue:2.79876e-55 SeqID:69.737 Method:BLAST Type:MODEL
---------------------------------------***************************************************


TEMPLATE ID    START          STOP           METHOD         STATUS         
2nvhA          119            270            BLAST          BUILT          

FINISHED PIPELINE ON ID: 6334ed7112a7263777564d50acf96cac on gopt-78.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 21:16:43 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.