SWISS-MODEL Repository - Model Details

Model Overview
Click on the bars to get more details about individual Models or experimental structures
1
274

Sequence
UniProt A5PKD8
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Kazal_1
IGFBP
I-set

Model 3D Structure
Model information:
Modelled residue range: 33 to 103
Based on template: [ 1wqj ]  
Sequence Identity [%]: 35%
Model date: 2008-08-30
Revision date: 2008-08-30

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    33        ECGPCR P---ERCPEP VRCPVPGIVA RDECGCCALC LGAEGASCGG
1wqjB     3     ai--hcppcs eeklarcrpp vgce--elvr epgcgccatc alglgmpcgv
                                                                      
TARGET                                      ssss s     ssss s    sss  
1wqjB                      hhhhh            ssss s     ssss s    sss  


TARGET    76    RAGARCGPGL VCASR----- AAGAAPEGTG LCV -                
1wqjB     49    yt-prcgsgl rcypprgvek plhtlmhgqg vcmel                
                                                                      
TARGET                     sss          hhhhh  s sss                  
1wqjB                   ss sss        hhhhhhh  s sssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: e2592288f9aef5747d112542ff669233 on BC2-cluster at Sat Aug 30 13:10:12 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>e2592288f9aef5747d112542ff669233
********************************************************************************************
>2aw2A Evalue:5.4E-11 SeqID:18.966 Method:HHSEARCH Type:MODEL
--------------------------------------------------*************--**---******************----
>1bmoA Evalue:3.9E-09 SeqID:24.706 Method:HHSEARCH Type:MODEL
--------------------------****--******************------------------------------------------
>1wqjB Evalue:2.2E-07 SeqID:35.443 Method:HHSEARCH Type:MODEL
-----------*****-*****************----------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2aw2A          151            264            HHSEARCH       BUILT          
1bmoA          78             151            HHSEARCH       BUILT          
1wqjB          33             103            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: e2592288f9aef5747d112542ff669233 on gopt-66.cluster.bc2.ch BC2-Cluster at
Sat Aug 30 13:12:30 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.