SWISS-MODEL Repository
Uniprot features:
SWISS-MODEL Repository - Model Details
Model Overview
Sequence
| UniProt | A5PKD8 |
Database: TrEMBL (Unreviewed)  |
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Domain
Model 3D Structure
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Template Links:
[ RCSB ]
[ PDBe ]
[ SCOP ]
[ CATH ]
display model: in [ AstexViewer ] download model: as [ pdb ] - as [ Deepview project ] 
This model has not been updated since 2008-08-30. In the meantime, new template
structures may have become available which would allow building a more reliable model.
Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now?
[ Submit ]
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Alignment
TARGET 78 GARCG PGLVCASRAA GAAPEGTGLC VCAQRG---- ------SVCG
1bmoA 54 pcq--nhhck hgkvceld-- ---enntpmc vcqdptscpa pigefekvcs
TARGET sssss sssssss
1bmoA sssssss ssss sss ssss
TARGET 113 SDGRSYPSVC ALRLRARQAP RALPG-HLHK ARDGPCEFAP ---------
1bmoA 97 ndnktfdssc hffatkctle gtkkghklhl dyigpckyip pcldseltef
TARGET hh hhhhhh
1bmoA s sss hh hhhhhhhh hhhhh ss ssss hhhhhhh
TARGET ---------- ---------- ---------- ---------- ----------
1bmoA 147 plrmrdwlkn vlvtlyerde dnnlltekqk lrvkkihene krleagdhpv
TARGET
1bmoA hhhhhhhhhh hhhhhhhh hhhh hhhhhhh h
TARGET ---------- ---------- ---------- ---------- ----------
1bmoA 197 ellardfekn ynmyifpvhw qfgqldqhpi dgylshtela plraplipme
TARGET
1bmoA hhhhhhhh hhhhhh hhhhh hh hh
TARGET ---------- ---------- ---------- ----------
1bmoA 247 hcttrffetc dldndkyial dewagcfgik qkdidkdlvi
TARGET
1bmoA hhhhhhh h hhhhhhh hh
no data available!
no data available!
Template Selection
START PIPELINE ON ID: e2592288f9aef5747d112542ff669233 on BC2-cluster at Sat Aug 30 13:10:12 2008 NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH ############# TEMPLATES SELECTED ############# >e2592288f9aef5747d112542ff669233 ******************************************************************************************** >2aw2A Evalue:5.4E-11 SeqID:18.966 Method:HHSEARCH Type:MODEL --------------------------------------------------*************--**---******************---- >1bmoA Evalue:3.9E-09 SeqID:24.706 Method:HHSEARCH Type:MODEL --------------------------****--******************------------------------------------------ >1wqjB Evalue:2.2E-07 SeqID:35.443 Method:HHSEARCH Type:MODEL -----------*****-*****************---------------------------------------------------------- TEMPLATE ID START STOP METHOD STATUS 2aw2A 151 264 HHSEARCH BUILT 1bmoA 78 151 HHSEARCH BUILT 1wqjB 33 103 HHSEARCH BUILT FINISHED PIPELINE ON ID: e2592288f9aef5747d112542ff669233 on gopt-66.cluster.bc2.ch BC2-Cluster at Sat Aug 30 13:12:30 2008
Template Search
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Downloads
Reference
If you are using models from the SWISS-MODEL Repository, please cite the following articles:
- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.
- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.