SWISS-MODEL Repository - Model Details

Model Overview
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1
655

Sequence
UniProt A5UNK6
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

STRING
A5UNK6: 420247.Msm_1579

Domain
Link to: [ InterPro ]
Helicase_C
UVR
ResIII
UvrB

Model 3D Structure
Model information:
Modelled residue range: 3 to 592
Based on template: [ 1d9x ]  
Sequence Identity [%]: 64%
Model date: 2008-09-03
Revision date: 2008-09-03

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-09-03. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    3         KFKLNS PYKPLGDQPK AINSLVDGIN KGEKEQTLLG VTGSGKTFTM
1d9xA     2     eg--rfqlva pyepqgdqpq aiaklvdglr rgvkhqtllg atgtgktfti
                                                                      
TARGET                             hh hhhhhhhhhh h  sssssss s    hhhhh
1d9xA                              hh hhhhhhhhhh    ssssss       hhhhh


TARGET    49    ANVIEKVQKP TLVISHNKTL AAQLYEEFKE FFPDNAVEYF VSYYDYYQPE
1d9xA     50    snviaqvnkp tlviahnktl agqlyselke ffphnaveyf vsyydyyqpe
                                                                      
TARGET          hhhhhhh  s sssss  hhh hhhhhhhhhh h    sssss           
1d9xA           hhhhhhh  s sssss  hhh hhhhhhhhhh h    sssss           


TARGET    99    AYVPRTDTFI DKESSVNEEI DIMRHSATQS LLSRDDVIVV SSVSCIYGIG
1d9xA     100   ayvpqtdtyi ekdakindei dklrhsatsa lferrdviiv asvsciyglg
                                                                      
TARGET          ssss  ssss         hh hhhhhhhhhh      sssss s  hh     
1d9xA                              hh hhhhhhhhhh      sssss s  hh     


TARGET    149   SPEDYGEFAF GIAVGDNYDR SDIIRKLVFM QYERNDIEFA RGHFRVRGDV
1d9xA     150   speeyrelvv slrvgmeier nallrrlvdi qydrndi--f rgtfrvrgdv
                                                                      
TARGET                   s ss          hhhhhhh                        
1d9xA                    s ss           hhhhhh                        


TARGET    199   IEINP-VHGT PPVRVELFGD EIDAISLIDK VTGKKTESLK RYMIFPAKHF
1d9xA     199   veifpasrde hcirveffgd eiea--evda ltgkvlgere hvaifpashf
                                                                      
TARGET                           sss        ssss       sss   sss      
1d9xA              sss           ssss s  s  ssss             sss      


TARGET    248   VVGQDKMDTA IRNISDELDE RLNEFNLSNK LLEAQRLEQR TRFDIEMLQE
1d9xA     250   vtreekmrla iqnieqelee rlaelraqgk lleaqrleqr trydlemmre
                                                                      
TARGET             hhhhhhh hhhhhhhhhh hhhhhhh           hhh hhhhhhhhh 
1d9xA              hhhhhhh hhhhhhhhhh hhhhhhh           hhh hhhhhhhhh 


TARGET    298   MGYCPGVENY SMHLSGRKWG EKPYSLLKYF PEDYLTIIDE SHVTLPQIRG
1d9xA     300   mgfcsgieny srhlalrppg stpytlldyf pddfliivde shvtlpqlrg
                                                                      
TARGET                 h    hhhh            hh       ssssss hhhhhhhh  
1d9xA                  h    hhhh            hh       ssssss hhhhhhhh  


TARGET    348   MYNGDRARKE TLVEHGFRLP SAKENRPLRF DEFESSINQI IYVSATPGAY
1d9xA     350   myngdrarkq vlvdhgfrlp saldnrpltf eefeqkinqi iyvsatpgpy
                                                                      
TARGET           hhhhhhhhh hhhh       hhh      h hhhhhh  ss ssss    hh
1d9xA            hhhhh   h hhhh       hhh      h hhhhhh  ss ssss    hh


TARGET    398   ELSRSSNIVE QIIRPTGLVD PEVIIRPVKG QVEDLLGEVK KRAKKDERVL
1d9xA     400   elehspgvve qiirptglld ptidvrptkg qiddligeir ervernertl
                                                                      
TARGET          hhhh    ss s           sssss     hhhhhhhhhh hhhhh   ss
1d9xA           hhhh    ss s           sssss     hhhhhhhhhh hhhhh   ss


TARGET    448   VTTLTKKMAE DLTDYYAKIG VKVRYMHSEI DTLERIDIVD DLRRGTFDVL
1d9xA     450   vttltkkmae dltdylkeag ikvaylhsei ktlerieiir dlrlgkydvl
                                                                      
TARGET          ss     hhh hhhhhh                   hh   hh hh     sss
1d9xA           ss     hhh hhhhhhhhh                hh   hh hh     sss


TARGET    498   VGVNLLREGL DLPEVSLVAI LDADKEGFLR NETSLIQTIG RAARNINGQV
1d9xA     500   vginllregl dipevslvai ldadkegflr sersliqtig raarnanghv
                                                                      
TARGET          ss              sssss s           hhhhhhhhh         ss
1d9xA           ss              sssss s           hhhhhhhhh         ss


TARGET    548   IMYVDEMTDS VKNATAITSK RRKIQIKYNE KHGIVPKTTK RALKD     
1d9xA     550   imyadtitks meiaiqetkr rraiqeeynr khgivprtvk keirdv    
                                                                      
TARGET          ssss    hh hhhhhhhhhh hhhhhhhhhh h                    
1d9xA           ssss    hh hhhhhhhhhh hhhhhhhhhh h

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 700fcd7792b1577965386fdc042bfdbd on BC2-cluster at Wed Sep  3 21:11:42 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  2 GO TO MODELING STEP


############# TEMPLATES SELECTED #############

>700fcd7792b1577965386fdc042bfdbd
**********************************************************************************
>1d9xA Evalue:0 SeqID:64.975 Method:BLAST Type:MODEL
**************************************************************************--------
>2nmvA Evalue:0 SeqID:60.726 Method:BLAST Type:MODEL
-************************************************************************---****--


TEMPLATE ID    START          STOP           METHOD         STATUS         
1d9xA          3              592            BLAST          BUILT          
2nmvA          10             642            BLAST          BUILT          

FINISHED PIPELINE ON ID: 700fcd7792b1577965386fdc042bfdbd on gopt-31.cluster.bc2.ch BC2-Cluster at
Wed Sep  3 21:14:42 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.