SWISS-MODEL Repository - Model Details

Model Overview
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Sequence
UniProt A5Z1X6
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Integrin_beta
Integrin_B_tail
EGF_2
Integrin_b_cyt

Model 3D Structure
Model information:
Modelled residue range: 752 to 797
Based on template: [ 1s4x ]  
Sequence Identity [%]: 63%
Model date: 2008-07-28
Revision date: 2008-07-28

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-07-28. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    752     KLLMIIHD RREFAKFEKE RMNAKWDTGE NPIYKSAVTT VVNPKYEG  
1s4xA     21      kllitihd rkefakfeee rarakwdtan nplykeatst ftnityrgt 
                                                                      
TARGET             hhhhh    hhhhhhhhh              hhhhhhhh hhhhhh    
1s4xA              hhhhhhh hhhhhhhhhh              hhhhhhhh hhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: a5406c6b619b144b43d112ee5a970c08 on BC2-cluster at Mon Jul 28 13:39:20 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>a5406c6b619b144b43d112ee5a970c08
********************************************************************************
>1s4xA Evalue:8.89344e-12 SeqID:63.043 Method:BLAST Type:MODEL
---------------------------------------------------------------------------*****
>2iueA Evalue:0 SeqID:40.167 Method:HHSEARCH Type:MODEL
--------------*****---****************------------------------------------------
>1jv2B Evalue:0 SeqID:35.736 Method:HHSEARCH Type:MODEL
--------**************************************----------*****************-------
>1yukA Evalue:5.3E-28 SeqID:30.357 Method:HHSEARCH Type:MODEL
--*******--***------------------------------------------------------------------
>2rmzA Evalue:3.6E-17 SeqID:62.791 Method:HHSEARCH Type:MODEL
------------------------------------------------------------------------****----


TEMPLATE ID    START          STOP           METHOD         STATUS         
1s4xA          752            797            BLAST          BUILT          
2iueA          140            378            HHSEARCH       BUILT          
1jv2B          81             726            HHSEARCH       BUILT          
1yukA          26             137            HHSEARCH       BUILT          
2rmzA          721            763            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: a5406c6b619b144b43d112ee5a970c08 on gopt-73.cluster.bc2.ch BC2-Cluster at
Mon Jul 28 13:46:32 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.