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Model Overview
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1
255

Sequence
UniProt A6NCN2
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Filament

Model 3D Structure
Model information:
Modelled residue range: 150 to 230
Based on template: [ 3tnu ]  
Sequence Identity [%]: 69%
Model date: 2013-02-12
Revision date: 2013-01-30

Quaternary structure information: [details]
Template (3tnu): HETERO TETRAMER
Model built :SINGLE CHAIN

Ligand information: [details]
Ligands in the template: none.
Ligands in the model: none.
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2013-01-30. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment

TARGET    1       TKEEINEL NRMIQRLTAE VENAKCQNSK LEAAVAQSEQ QGEAALSDAR
3tnuB     382     tkheisem nrmiqrlrae idnvkkqcan lqnaiadaeq rgelalkdar
                                                                      
TARGET             hhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh
3tnuB              hhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh


TARGET    49    CKLAELEGAL QKAKQDMACL IREYQEVMNS KLA ------ -------   
3tnuB     430   nklaeleeal qkakqdmarl lreyqelmnt klaldveiat yrklleg   
                                                                      
TARGET          hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hh                   
3tnuB           hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhhhhhhh hhhhh     



Quality


Template's ligands section
Template without ligands.
No ligands were included in the model.


Quaternary Structure Annotation of the Template
3tnu is annotated as HETERO TETRAMER
PISA was used to annotate the quaternary structure, because the author assignment was ambigous (i.e the same chains appear in different biolgoical units annotated by the author)
A biological unit file could be identified with the same complex description as the PISA annotation and was used to build the assembly: 3tnu.pdb1.gz

Quaternary Structure Modelling of the Target Protein
3tnu_1


Template Selection
 - Start SMR-Pipeline for:deba7fda443d4a33e5f552b3a4297fa2 on BC2-cluster at Tue Feb 12 01:09:14
2013 


 - Analyze BLAST summary ... 
 - Blast template search was successfull, number of templates selected for modeling:  1
 - But still uncovered regions of the target sequence detected, go for: HHSEARCH

FATAL - No A3m found

 - Run HHSearch to detect more templates...
 - Generate new template library
 - Run template selection against modfied template library 
 - Summarize templates: 
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with A found
 - No template with B found
 - Send 3 Templates for modeling

 - @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
 -                                                *************************
 - building model based on 3tnuB (150-230) was successful 
 -  **************************
 - building model based on 3uf1A (4-86) was successful 
 -                                 **********************
 - building model based on 3kltB (102-172) was successful 
 - Repository Pipeline parameter

   Cut-off parameters to model the target based on a BLAST target-template alignment
    Evalue :                                     0.0001
    Minimum Template size (aa) for ranking :     25
    Minimum Sequence identity :                  60

   Cut-off parameters to model the target based on a HHSearch target-template alignment
    Evalue :                                     0.0001
    Probability :                                50
    MAC :                                        0.3

   Parameters for model selection
    Minimal number of uncovered target
     residues after BLAST to run HHSEARCH :      50
    Minimal number of uncovered target
     residues to model an additional template :  25
    
 - Finish SMR-Pipeline for:deba7fda443d4a33e5f552b3a4297fa2 on BC2-cluster at Tue Feb 12 01:39:52
2013 




Template Description
Match Chain SeqId

3tnu: HETEROCOMPLEX OF COIL 2B DOMAINS OF HUMAN INTERMEDIATE FILPROTEINS, KERATIN 5 (KRT5) AND KERATIN 14 (KRT14)
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

155-244 3tnuA 17%
[Model]
151-244 3tnuB 59%
[Model]
150-230 3tnuB 69%
[Model]

3swk: CRYSTAL STRUCTURE OF VIMENTIN COIL1B FRAGMENT
Solved by: X-RAY, Resolution: 1.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

1-75 3swkA 35%
[Model]
1-73 3swkB 34%
[Model]

3klt: CRYSTAL STRUCTURE OF A VIMENTIN FRAGMENT
Solved by: X-RAY, Resolution: 2.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

102-172 3kltA 32%
[Model]
101-171 3kltC 31%
[Model]
103-172 3kltD 33%
[Model]
102-172 3kltB 32%
[Model]

3trt: CRYSTAL STRUCTURE OF STABILISED VIMENTIN COIL2 FRAGMENT
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

101-172 3trtB 32%
[Model]
101-173 3trtA 32%
[Model]

3v4w: STRUCTURE OF E347K MUTANT OF LAMIN
Solved by: X-RAY, Resolution: 3.70A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

176-247 3v4wA 25%
[Model]

1c1g: CRYSTAL STRUCTURE OF TROPOMYOSIN AT 7 ANGSTROMS RESOLUTIONIN THE SPERMINE-INDUCED CRYSTAL FORM
Solved by: X-RAY, Resolution: 7.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

193-218 1c1gB 15%
[Model]
193-218 1c1gA 15%
[Model]
10-59 1c1gB 6%
[Model]
10-59 1c1gA 6%
[Model]
6-69 1c1gB 17%
[Model]
6-69 1c1gA 17%
[Model]
8-46 1c1gB 15%
[Model]
8-46 1c1gA 15%
[Model]
11-51 1c1gB 15%
[Model]
11-51 1c1gA 15%
[Model]
193-218 1c1gC 15%
[Model]
193-218 1c1gD 15%
[Model]
10-59 1c1gC 6%
[Model]
10-59 1c1gD 6%
[Model]
6-69 1c1gC 17%
[Model]
6-69 1c1gD 17%
[Model]
8-46 1c1gC 15%
[Model]
8-46 1c1gD 15%
[Model]
11-51 1c1gC 15%
[Model]
11-51 1c1gD 15%
[Model]
199-215 1c1gC 12%
[Model]
199-215 1c1gB 12%
[Model]
199-215 1c1gA 12%
[Model]
199-215 1c1gD 12%
[Model]
17-27 1c1gC 18%
[Model]
17-27 1c1gB 18%
[Model]
17-27 1c1gA 18%
[Model]
17-27 1c1gD 18%
[Model]
194-214 1c1gC 24%
[Model]
194-214 1c1gB 24%
[Model]
194-214 1c1gA 24%
[Model]
194-214 1c1gD 24%
[Model]

2xv5: HUMAN LAMIN A COIL 2B FRAGMENT
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

191-244 2xv5B 24%
[Model]
191-244 2xv5A 24%
[Model]

1gk4: HUMAN VIMENTIN COIL 2B FRAGMENT (CYS2)
Solved by: X-RAY, Resolution: 2.30A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

166-244 1gk4B 24%
[Model]
166-244 1gk4A 24%
[Model]
168-245 1gk4D 23%
[Model]
175-244 1gk4C 23%
[Model]
171-244 1gk4F 23%
[Model]
175-244 1gk4E 23%
[Model]

1x8y: HUMAN LAMIN COIL 2B
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

176-247 1x8yA 23%
[Model]

3v5b: STRUCTURE OF COIL 2B OF HUMAN LAMIN
Solved by: X-RAY, Resolution: 3.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

176-247 3v5bA 23%
[Model]

3v4q: STRUCTURE OF R335W MUTANT OF HUMAN LAMIN
Solved by: X-RAY, Resolution: 3.06A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

176-247 3v4qA 22%
[Model]

3uf1: CRYSTAL STRUCTURE OF VIMENTIN (FRAGMENT 144-251) FROM HOMONORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR4796B
Solved by: X-RAY, Resolution: 2.81A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

129-186 3uf1A 19%
[Model]
38-73 3uf1A 28%
[Model]
38-72 3uf1B 29%
[Model]
1-86 3uf1B 38%
[Model]
1-86 3uf1A 38%
[Model]
129-187 3uf1C 20%
[Model]
129-187 3uf1D 20%
[Model]
36-79 3uf1C 30%
[Model]
36-80 3uf1D 29%
[Model]
2-85 3uf1D 38%
[Model]
2-83 3uf1C 39%
[Model]
73-88 3uf1A 44%
[Model]
72-88 3uf1B 41%
[Model]
71-88 3uf1C 44%
[Model]
71-88 3uf1D 44%
[Model]

2w49: ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCL
Solved by: X-RAY, Resolution: 35.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

197-218 2w49V 9%
[Model]
197-218 2w49U 9%
[Model]
197-218 2w49B 9%
[Model]
197-218 2w49A 9%
[Model]
10-21 2w49V 0%
[Model]
10-21 2w49U 0%
[Model]
10-21 2w49B 0%
[Model]
10-21 2w49A 0%
[Model]
195-215 2w49V 19%
[Model]
195-215 2w49U 19%
[Model]
195-215 2w49B 19%
[Model]
195-215 2w49A 19%
[Model]
6-67 2w49V 18%
[Model]
6-67 2w49U 18%
[Model]
6-67 2w49B 18%
[Model]
6-67 2w49A 18%
[Model]
11-24 2w49V 7%
[Model]
11-24 2w49U 7%
[Model]
11-24 2w49B 7%
[Model]
11-24 2w49A 7%
[Model]
10-24 2w49V 13%
[Model]
10-24 2w49U 13%
[Model]
10-24 2w49B 13%
[Model]
10-24 2w49A 13%
[Model]
17-27 2w49V 18%
[Model]
17-27 2w49U 18%
[Model]
17-27 2w49B 18%
[Model]
17-27 2w49A 18%
[Model]
9-19 2w49V 0%
[Model]
9-19 2w49U 0%
[Model]
9-19 2w49B 0%
[Model]
9-19 2w49A 0%
[Model]

1gk6: HUMAN VIMENTIN COIL 2B FRAGMENT LINKED TO GCN4 LEUCINE ZIPPER (Z2B)
Solved by: X-RAY, Resolution: 1.90A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

193-244 1gk6B 15%
[Model]
193-246 1gk6A 16%
[Model]

3tyy: CRYSTAL STRUCTURE OF HUMAN LAMIN-B1 COIL 2 SEGMENT
Solved by: X-RAY, Resolution: 2.40A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

173-245 3tyyA 12%
[Model]
174-244 3tyyB 13%
[Model]

4a7l: STRUCTURE OF THE ACTIN-TROPOMYOSIN-MYOSIN COMPLEX (RIGOR A
Solved by: X-RAY, Resolution: 8.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

193-206 4a7lB 7%
[Model]
193-206 4a7lH 7%
[Model]

4a7f: STRUCTURE OF THE ACTIN-TROPOMYOSIN-MYOSIN COMPLEX (RIGOR A
Solved by: X-RAY, Resolution: 8.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

193-206 4a7fH 7%
[Model]
193-206 4a7fB 7%
[Model]

4a7h: STRUCTURE OF THE ACTIN-TROPOMYOSIN-MYOSIN COMPLEX (RIGOR A
Solved by: X-RAY, Resolution: 8.10A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

193-206 4a7hH 7%
[Model]
193-206 4a7hB 7%
[Model]

2w4u: ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLFROZEN AFTER A LENGTH STEP
Solved by: X-RAY, Resolution: 35.00A, Identified by HHSEARCH
[ SMTL ]   [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  

6-71 2w4uA 18%
[Model]
4-28 2w4uA 16%
[Model]
11-69 2w4uA 17%
[Model]
197-218 2w4uV 9%
[Model]
197-218 2w4uU 9%
[Model]
197-218 2w4uB 9%
[Model]
10-21 2w4uV 0%
[Model]
10-21 2w4uU 0%
[Model]
10-21 2w4uB 0%
[Model]
9-26 2w4uA 39%
[Model]
11-73 2w4uA 10%
[Model]
195-215 2w4uV 19%
[Model]
195-215 2w4uU 19%
[Model]
195-215 2w4uB 19%
[Model]
6-67 2w4uV 18%
[Model]
6-67 2w4uU 18%
[Model]
6-67 2w4uB 18%
[Model]
7-47 2w4uA 7%
[Model]
6-51 2w4uA 20%
[Model]
11-24 2w4uV 7%
[Model]
11-24 2w4uU 7%
[Model]
11-24 2w4uB 7%
[Model]
10-24 2w4uV 13%
[Model]
10-24 2w4uU 13%
[Model]
10-24 2w4uB 13%
[Model]
39-47 2w4uA 44%
[Model]
17-27 2w4uV 18%
[Model]
17-27 2w4uU 18%
[Model]
17-27 2w4uB 18%
[Model]
42-49 2w4uA 13%
[Model]
9-19 2w4uV 0%
[Model]
9-19 2w4uU 0%
[Model]
9-19 2w4uB 0%
[Model]
201-213 2w4uA 15%
[Model]
198-216 2w4uA 5%
[Model]

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.




SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.