SWISS-MODEL Repository - Model Details

Model Overview
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1
993

Sequence
UniProt A6ZVS0
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Helicase_C
ResIII

Model 3D Structure
Model information:
Modelled residue range: 80 to 623
Based on template: [ 1wp9 ]  
Sequence Identity [%]: 24%
Model date: 2008-08-31
Revision date: 2008-08-31

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-31. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    80        VYPTNY EVRDYQYTIV HKSLFQNTLC AIPTGMGKTF IASTVMLNYF
1wp9A     1     mv--lrrdli qpriyqeviy akcketncli vlptglgktl iammiaeyrl
                                                                      
TARGET                 hhh    hhhhhhh hhh   ssss s      hhh hhhhhhhhhh
1wp9A            s  ss hhh    hhhhhhh hhh   ssss ss     hhh hhhhhhhhhh


TARGET    126   RWTKKAKIIF TAPTRPLVAQ QIKACLGITG IPSDQTAIL- LDKSRKNREE
1wp9A     49    tkyg-gkvlm laptkplvlq haesfrrlfn lppekivalt gekspeersk
                                                                      
TARGET          hh     sss ss  hhhhhh hhhhhhhh       sssss      hhhhhh
1wp9A           hh     sss ss  hhhhhh hhhhhhhsss     sssss      hhhhhh


TARGET    175   IWANKRVFFA TPQVVENDLK RGVLDPKDIV CLVIDEAHRA TGSYAYTNVV
1wp9A     98    awarakviva tpqtiendll agrisledvs livfdeahra vgnyayvfia
                                                                      
TARGET          hhhh sssss   hhhhhhhh            ssssss          hhhhh
1wp9A           hhhh sssss   hhhhhhhh            ssssss          hhhhh


TARGET    225   KFIDRFNSSY RLLALTATPA SDLEGVQEVV NNLDISKIEI RTEESMDIVK
1wp9A     148   reykrqaknp lvigltaspg stpekimevi nnlgiehiey rsenspdvrp
                                                                      
TARGET          hhhhh      ssssss       hhhhhhhh hhh   ssss s    hhhhh
1wp9A           hhhhh      ssssss       hhhhhhhh hhh   ssss s    hhhhh


TARGET    275   YMKKRKKEKI EVPLLLEIED IIEQLGIAVK PVLQQAIELG IYEECDPSQI
1wp9A     198   yvkgirfewv rvdlpeiyke vrkllremlr dalkplaetg llessspdip
                                                                      
TARGET                 sss ss   hhhhh hhhhhhhhhh hhhhhhhhh          ss
1wp9A                  sss ss   hhhhh hhhhhhhhhh hhhhhhhhh            


TARGET    325   NAFKAMQQSQ KIIANPTIPE GIKWRNFFIL QLLNN----- -VGQMLKRLK
1wp9A     248   kke------- vlragqiine emakgnhdlr glllyhamal klhhaielle
                                                                      
TARGET          sss  sssss hhhhhhhhhh hhhh                      hhhhhh
1wp9A            hh        hhhhhhhhhh hhhh       hhhhhhhhhh hhhhhhhhhh


TARGET    369   IYGIRTFFNY FQNKCTEFTT KYNLKKSTNK IAAEFYYHPI LKNIKNQCEN
1wp9A     291   tqglsalra- ---------- ---------- ---------y ikklyeeaka
                                                                      
TARGET             hhhhsss ss              hhh         ssss shhhhhhhh 
1wp9A           h   hhhhh                                 h hhhhhhhhh 


TARGET    419   YLSDPKFVGH GKLQCVRDEL MEFFQKRGSD SRVIIFTELR ESALEIVKFI
1wp9A     311   gstk------ ---------- ---------- askeifsdk- -------rmk
                                                                      
TARGET                   h h   hhhhhh hhhhhhhh    hhh    h    hh    hh
1wp9A                                            hhhhh   h         hhh


TARGET    469   DSVANDQIRP HIFIGQARAK EGFDEVKYTR KHAPKGRKKV ERLHRQEQEK
1wp9A     327   kaisllvqak eigldhpkmd k--------- ----lkeiir eqlqrkqnsk
                                                                      
TARGET          hhhhhhhhhh          s ssssss  ss sssssshhhh hhhhh     
1wp9A           hhhhhhhhhh hh     hhh h              hhhhhh hhhhh     


TARGET    519   FLEAERTKRA ANDKLERSAR RTGSSEE-AQ ISGMNQKMQK EVIHNFKKGE
1wp9A     364   iivftnyret a-kkivnelv kdgikakrfv gqaskqreqk lildefarge
                                                                      
TARGET          sssss          hhhhhh h   sss            hh hhhhhhhh  
1wp9A           sssss  hhh h hhhhhhhh     sssss          hh hhhhhhhh  


TARGET    568   YNVLVCTSIG EEGLDIGEVD LIICYDTTSS PIKNIQRMGR TGRKRDGKIV
1wp9A     420   fnvlvatsvg eegldvpevd lvvfyepvps airsiqrrgr tgrhmpgrvi
                                                                      
TARGET           sssss      hhh     s sssss   hh hhhhhhhhh         sss
1wp9A            sssss      hhh     s sssss   hh hhhhhhhhh         sss


TARGET    618   LLFSSN --- -------                                    
1wp9A     470   ilmakgtrde ayywssr                                    
                                                                      
TARGET          sssss                                                 
1wp9A           sssss   hh hhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: d00d93e620e3ac4cafe7a33c24692c00 on BC2-cluster at Sun Aug 31 03:56:16 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>d00d93e620e3ac4cafe7a33c24692c00
***********************************************************************************
>1wp9A Evalue:1.1E-42 SeqID:24.638 Method:HHSEARCH Type:MODEL
-------********************-***---*--*-**-**********-------------------------------
>1d9xA Evalue:8.9E-13 SeqID:23.649 Method:HHSEARCH Type:MODEL
-------------------------------------------************----------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1wp9A          80             623            HHSEARCH       BUILT          
1d9xA          519            661            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: d00d93e620e3ac4cafe7a33c24692c00 on gopt-67.cluster.bc2.ch BC2-Cluster at
Sun Aug 31 04:05:02 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.