SWISS-MODEL Repository - Model Details

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1
594

Sequence
UniProt A6ZZW1
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
PHD
TFIIS_M
SPOC

Model 3D Structure
Model information:
Modelled residue range: 66 to 134
Based on template: [ 1wew ]  
Sequence Identity [%]: 29%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    66                DEADEGYVR CLCGANNENY DAAEYSHGDM VQCDG--CDT
1wewA     1     gssgssged- -pfqpeikvr cvcgnslet- -------dsm iqcedprchv
                                                                      
TARGET                                                      sss      s
1wewA                                                       sss      s


TARGET    103   WQHIKCMTDG KDTIDGLMSE DSKYYCELCD PS -----             
1wewA     41    wqhvgcvilp dkpmdgnppl pesfyceicr ltsgpssg             
                                                                      
TARGET          ss                          hhhh                      
1wewA           ss                          hhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 1ece5481db8314e5ebf124a780992fee on BC2-cluster at Fri Aug 29 23:46:42 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>1ece5481db8314e5ebf124a780992fee
*************************************************************************************
>2dmeA Evalue:1.1E-12 SeqID:23.387 Method:HHSEARCH Type:MODEL
---------------------------------*****-**-*********----------------------------------
>1wewA Evalue:7.1E-11 SeqID:29.577 Method:HHSEARCH Type:MODEL
---------***-******------------------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2dmeA          233            356            HHSEARCH       BUILT          
1wewA          66             134            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 1ece5481db8314e5ebf124a780992fee on gopt-29.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 23:53:07 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.