SWISS-MODEL Repository - Model Details

Model Overview
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1
1198

Sequence
UniProt A7A179
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
PH
UDPGT
GRAM
Glyco_transf_28

Model 3D Structure
Model information:
Modelled residue range: 741 to 1155
Based on template: [ 1rrv ]  
Sequence Identity [%]: 21%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    741      KFGLLTI GSRGDVQPYI ALGKGLIKEG HQVVIITHSE FRDFVESHGI
1rrvA     1     m--rvllsvc gtrgdveigv aladrlkalg vqtrmcappa aeerlaevgv
                                                                      
TARGET              ssssss   hhhhhhhh hhhhhhhhh   ssssss  h hhhhhhhh  
1rrvA           s  sssssss   hhhhhhhh hhhhhhhhh   ssssss  h hhhhhhhh  


TARGET    788   QFEEIAGNPV ELMSLMVENE SMNVKMLREA SSKFRGWIDA LLQTSWEVCN
1rrvA     49    phvpv-glpq hmmlqegmpp ppp----eee qrlaamtvem qfdavpgaae
                                                                      
TARGET          sssss                         hh hhhhhhhhhh hhhhhhhh  
1rrvA           sssss                   h    hhh hhhhhhhhhh hhhhhhhh  


TARGET    838   -RRKFDILIE SPSAMVGIHI AEALQIPYFR AFTMPWTRTR AYPHAFIVPD
1rrvA     94    gcaavvavgd laaatgvrsv aeklglpffy svpspvylas phlppaydep
                                                                      
TARGET             sssssss hhhhhhhhhh hhhh  ssss ss                   
1rrvA              sssssss hhhhhhhhhh hhhh  ssss ss                   


TARGET    887   QKRGGNYNYL THVLFENVFW KGISGQVNKW RVETLGLGKT NLFLLQQNNV
1rrvA     144   ttpgvtdirv lweeraarfa drygptlnrr ra-eiglppv edvfgyghge
                                                                      
TARGET                 hhh hhhhhhhhhh hhhhhhhhhh h            hhhhh   
1rrvA                  hhh hhhhhhhhhh hhhhhhhhhh hh           hhhhh   


TARGET    937   PFLYNVSPTI FPPSIDFSEW VRVTGYWFLD DKSTFKPPAE LQEFISEARS
1rrvA     193   rpllaadpvl aplqpdvd-- avqtgawlls der--plppe leaflaa---
                                                                      
TARGET            sss                                    hh hhhhhh    
1rrvA             sss                                    hh hhhhhh    


TARGET    987   KGKKLVYIGF GSIVVSNAKE MTEALVEAVM EADVYCILNK GWSERLGDKA
1rrvA     236   -gsppvhigf gsssgrgiad aakvaveair aqgrrvilsr gwtelv----
                                                                      
TARGET               ssss        hhhh hhhhhhhhhh     ssssss           
1rrvA                ssss        hhhh hhhhhhhhhh h   ssssss           


TARGET    1037  AKKTEVDLPR NILNIGNVPH DWLFPQVDAA VHHGGSGTTG ASLRAGLPTV
1rrvA     281   ----lpddrd dcfaidevnf qalfrrvaav ihhgsagteh vatragvpql
                                                                      
TARGET                     sssss    h hhhh    ss ss   hhhhh hhhhh  sss
1rrvA                      sssss    h hhhh    ss ss   hhhhh hhhhh  sss


TARGET    1087  IKPFFGDQFF YAGRVEDIGV GIALKK--LN AQTLADALKV ATTNKIMKDR
1rrvA     327   viprntdqpy fagrvaalgi gvahdgptpt feslsaaltt vlape-trar
                                                                      
TARGET          ss     hhh hhhhhhhh s ssss       hhhhhhhhhh hh      hh
1rrvA           ss     hhh hhhhhhhh s ssss       hhhhhhhhhh    hh hhhh


TARGET    1135  AGLIKKKISK EDGIKTAISA I -----                         
1rrvA     376   aeavagmvl- tdgaaaaadl vlaavgr                         
                                                                      
TARGET          hhhhhh       hhhhhhhh h                               
1rrvA           hhhhhh       hhhhhhhh hhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 347e58f0e5d36023ff59346b2bfd224b on BC2-cluster at Fri Aug 29 20:00:55 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>347e58f0e5d36023ff59346b2bfd224b
********************************************************************************
>1rrvA Evalue:3.5E-39 SeqID:21.770 Method:HHSEARCH Type:MODEL
-------------------------------------------------****************************---
>2dhkA Evalue:7.5E-07 SeqID:14.286 Method:HHSEARCH Type:MODEL
----------------*******---------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1rrvA          741            1155           HHSEARCH       BUILT          
2dhkA          235            342            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 347e58f0e5d36023ff59346b2bfd224b on gopt-80.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 20:10:07 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.