SWISS-MODEL Repository - Model Details

Model Overview
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1
1198

Sequence
UniProt A7A179
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
PH
UDPGT
GRAM
Glyco_transf_28

Model 3D Structure
Model information:
Modelled residue range: 235 to 342
Based on template: [ 2dhk ]  
Sequence Identity [%]: 14%
Model date: 2008-08-29
Revision date: 2008-08-29

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-29. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    235        NPRSV KMSGNLNIRT K---LIRSTR YWCVLKNHL- FSMYTSSTEL
2dhkA     1     gss--gssgk klcgylskfg gkgpirgwks rwffyderkc qlyysrtaqd
                                                                      
TARGET                      sssssssss       ssss ssssss     sssss     
2dhkA                       sssssssss       ssss ssssss     sssss     


TARGET    276   YFPVLTIDLR EVQKIETQKH TLNGSATKTF KLYTDESTFK FNADSEFSAK
2dhkA     49    anpldsidls savfdckad- ----aeegif eiktpsrvit lkaatkqaml
                                                                      
TARGET              sss      sssss           sss sss     ss sss   hhhh
2dhkA               sss      sssssss        ssss sss     ss sss   hhhh


TARGET    326   SWVNALKKEQ FAAQNSE -- ------                          
2dhkA     94    ywlqqlqmkr wefhnsppap sgpssg                          
                                                                      
TARGET          hhhhhhhhhh hhhhh                                      
2dhkA           hhhhhhhhhh hhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 347e58f0e5d36023ff59346b2bfd224b on BC2-cluster at Fri Aug 29 20:00:55 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>347e58f0e5d36023ff59346b2bfd224b
********************************************************************************
>1rrvA Evalue:3.5E-39 SeqID:21.770 Method:HHSEARCH Type:MODEL
-------------------------------------------------****************************---
>2dhkA Evalue:7.5E-07 SeqID:14.286 Method:HHSEARCH Type:MODEL
----------------*******---------------------------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1rrvA          741            1155           HHSEARCH       BUILT          
2dhkA          235            342            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 347e58f0e5d36023ff59346b2bfd224b on gopt-80.cluster.bc2.ch BC2-Cluster at
Fri Aug 29 20:10:07 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.