SWISS-MODEL Repository - Model Details

Model Overview
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1
1134

Sequence
UniProt A7MB46
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
Cadherin
Cadherin
Cadherin
Cadherin
Cadherin
Cadherin_2

Model 3D Structure
Model information:
Modelled residue range: 142 to 346
Based on template: [ 1edh ]  
Sequence Identity [%]: 23%
Model date: 2008-07-28
Revision date: 2008-07-28

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-07-28. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    142       IPIEIS ESAAVGTRIP LDSAFDPDVG ENSLHTYSLS AND-------
1edhA     3     vi--ppiscp enek-gefpk nlvqiksnrd ketkvfysit gqgadkppvg
                                                                      
TARGET                ssss s        s sssss   hh hh sssssss           
1edhA                 ssss s        s sssss   hh hh sssssss           


TARGET    181   FFNIEVRTRT DGAKYAELIV VRELDRELKS SYELQLTASD MGVPQRSGSS
1edhA     50    vfiiere--- ----tgwlkv tqpldreaia kyilyshavs sngeavedpm
                                                                      
TARGET          sssss           sssss s        s ssssssssss s  sss   s
1edhA           sssss           sssss s        s ssssssssss s  sss   s


TARGET    231   ILKISISDSN DNSPAFEQQS YIIQLLENSP VGTLLLDLNA TDPDE---GA
1edhA     93    eivitvtdqn dnrpeftqev fegsvaegav pgtsvmkvsa tdadddvnty
                                                                      
TARGET          sssssss        sss ss sssssss         sssss s         
1edhA           sssssss        sss ss sssssss      ssssssss s         


TARGET    278   NGKIVYSFSS HVSPK-IIET FKIDSERGHL T-LFKQVDYE ITKSYEIDVQ
1edhA     143   naaiaytivs qdpelphknm ftvnrdtgvi svltsgldre syptytlvvq
                                                                      
TARGET            ssssssss ss       s ssss   sss s ss         ssssssss
1edhA             ssssssss ss       s ssss   sss sss          ssssssss


TARGET    326   AQDLGPNSIP AHCKIIIKVV D                               
1edhA     193   aadlqgegls ttakavitvk d-                              
                                                                      
TARGET          sssss ssss ssssssssss                                 
1edhA           ssss    ss ssssssssss

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: 4bc1116c825f78a498a28fd78d95a000 on BC2-cluster at Mon Jul 28 14:35:36 2008 
NO HITS FOUND IN BLAST-SEARCH FOR SEQID-CUTOFF 60 GO TO HHSEARCH


############# TEMPLATES SELECTED #############

>4bc1116c825f78a498a28fd78d95a000
*********************************************************************************
>1edhA Evalue:1.4E-27 SeqID:23.502 Method:HHSEARCH Type:MODEL
----------***************--------------------------------------------------------
>1edhA Evalue:4.2E-25 SeqID:22.111 Method:HHSEARCH Type:MODEL
---------------------------**************----------------------------------------
>1wyjA Evalue:8.9E-16 SeqID:26.316 Method:HHSEARCH Type:MODEL
--********-----------------------------------------------------------------------
>1op4A Evalue:6E-14 SeqID:17.293 Method:HHSEARCH Type:MODEL
---------------------------------***-*****---------------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
1edhA          142            346            HHSEARCH       BUILT          
1edhA          381            568            HHSEARCH       BUILT          
1wyjA          27             140            HHSEARCH       NOT BUILT      
1op4A          462            594            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: 4bc1116c825f78a498a28fd78d95a000 on gopt-32.cluster.bc2.ch BC2-Cluster at
Mon Jul 28 14:51:19 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.