SWISS-MODEL Repository - Model Details

Model Overview
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1
525

Sequence
UniProt A9JRD8
Database: TrEMBL (Unreviewed) automatically annotated and not reviewed

Domain
Link to: [ InterPro ]
BTB
BACK
PHR

Model 3D Structure
Model information:
Modelled residue range: 116 to 223
Based on template: [ 2vkp ]  
Sequence Identity [%]: 84%
Model date: 2008-08-28
Revision date: 2008-08-28

Quaternary structure information: [details]
NA

Ligand information: [details]
NA
Template Links: [ RCSB ]   [ PDBe ]   [ SCOP ]  [ CATH ]  
display model: in [ AstexViewer ]
download model: as [ pdb ] - as [ Deepview project ]

This model has not been updated since 2008-08-28. In the meantime, new template structures may have become available which would allow building a more reliable model. Would you like to submit the target protein to SWISS-MODEL Workspace and build a new model now? [ Submit ]



Alignment 

TARGET    116      MFNNEQM ADVHFIVGPP GESQRVPAHK YVLAVGSSVF CAMFYGDLAE
2vkpB     0     s--xfnnelx advhfvvgpp gatrtvpahk yvlavgssvf yaxfygdlae
                                                                      
TARGET                       sssssss   sssssss h hhhhh   hh hhh       
2vkpB                        sssssss   sssssss h hhhh   hhh hhh       


TARGET    163   GDSDIHIPDV EPAAFLILLK YMYSDEIELA PDTVLATLYA AKKYLVSALA
2vkpB     48    vkseihipdv epaaflillk yxysdeidle adtvlatlya akkyivpala
                                                                      
TARGET            sssss     hhhhhhhhh hhh           hhhhhhh hh   hhhhh
2vkpB             sssss     hhhhhhhhh hhh           hhhhhhh hh   hhhhh


TARGET    213   RACVGFLETS L                                          
2vkpB     98    kacvnflets l-                                         
                                                                      
TARGET          hhhhhhhh                                              
2vkpB           hhhhhhhh

Quality


no data available!

no data available!
Template Selection 
START PIPELINE ON ID: d4621d5909741c18657c39c7c705d99e on BC2-cluster at Thu Aug 28 19:52:04 2008 
BLAST_TEMPLATE SELECTION SUCCESSFUL TEMPLATES FOUND:  1 BUT STILL ROOM FOR IMPROVEMENT GO TO
HHSEARCH


############# TEMPLATES SELECTED #############

>d4621d5909741c18657c39c7c705d99e
***************************************************************************
>2vkpB Evalue:4.01883e-48 SeqID:84.259 Method:BLAST Type:MODEL
----------------****************-------------------------------------------
>2eqxA Evalue:4.6E-06 SeqID:12.195 Method:HHSEARCH Type:MODEL
-------------------------------************--------------------------------


TEMPLATE ID    START          STOP           METHOD         STATUS         
2vkpB          116            223            BLAST          BUILT          
2eqxA          219            300            HHSEARCH       BUILT          

FINISHED PIPELINE ON ID: d4621d5909741c18657c39c7c705d99e on gopt-72.cluster.bc2.ch BC2-Cluster at
Thu Aug 28 19:55:45 2008


Template Description
Match Chain SeqId

Downloads
Reference

If you are using models from the SWISS-MODEL Repository, please cite the following articles:

- Kiefer F, Arnold K, Künzli M, Bordoli L, Schwede T (2009).
The SWISS-MODEL Repository and associated resources.
Nucleic Acids Res. 37, D387-D392.

- Jürgen Kopp and Torsten Schwede (2004)
The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models.
Nucleic Acids Res. 32, D230-D234.
SWISS-MODEL is developed by the Protein Structure Bioinformatics group at the SIB - Swiss Institute of Bioinformatics & the Biozentrum University of Basel. © 2011.